Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01940 294 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 157 / 3e-45 ATPUB49 plant U-box 49 (.1) AT2G36130 145 / 1e-44 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 154 / 3e-44 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT5G13120 112 / 1e-30 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G63400 114 / 3e-30 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34870 101 / 2e-27 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G15790 105 / 4e-27 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G56070 100 / 5e-27 ROC2 rotamase cyclophilin 2 (.1.2) AT4G33060 105 / 8e-27 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071600 [exp] 301 / 3e-106 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 159 / 5e-46 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.009G146400 [exp] 154 / 3e-44 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 139 / 2e-42 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G106200 [exp] 119 / 2e-32 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.002G185200 [exp] 110 / 1e-29 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.004G144300 [exp] 111 / 2e-29 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.003G167700 [exp] 108 / 2e-29 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G060200 [exp] 108 / 3e-29 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009237 [exp] 283 / 1e-98 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 171 / 3e-50 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 166 / 1e-48 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10020573 [exp] 154 / 4e-44 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 154 / 4e-44 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10021335 [exp] 130 / 1e-38 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 126 / 7e-37 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024831 [exp] 129 / 7e-35 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 129 / 8e-35 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10023860 [exp] 120 / 1e-32 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.002G149700.3 pacid=42776877 polypeptide=Potri.002G149700.3.p locus=Potri.002G149700 ID=Potri.002G149700.3.v4.1 annot-version=v4.1 ATGTCAGTTACACTTCACACAAATCTTGGTGATATCAAATGCGAGATCGCCTGCGATGAAGTTCCCAAGGCCTCCGAGAATTTTTTGGCGCTGTGTGCTA GTGGGTATTATGATGGGACCATATTTCATCGAAATATTAAAGGTTTTATGATTCAAGGTGGAGATCCTACAGGGACAGGAAAAGGAGGAACTAGTATTTG GGGCAAGAAGTTCAATGATGAGATTAGAGAGTCTCTCAAGCATAATGCAAGGGGTACACTCTCAATGGCCAATAGTGGACCGAATACTAATGGAAGCCAG TTTTTCATAACGTATGCAAAGCAACCCCATCTAAATGGGTTGTACACTGTGTTTGGCAAAGTAATTCATGGGTTTGAAGTCCTCGATATCATGGAAAAGA CTCAAACAGGGCAAGGGGATAGACCTCTTGCAGAGATAAGGATCAATCGCGTGACAATACATGCCAACCCACTTGCTGGTAATGAGAGCAAAATAAGGAT TGACTATAGTGGGCATGCACATTCAAGTCACTTTGGGTGA
AA sequence Show only first row Show all	>Potri.002G149700.3 pacid=42776877 polypeptide=Potri.002G149700.3.p locus=Potri.002G149700 ID=Potri.002G149700.3.v4.1 annot-version=v4.1 MSVTLHTNLGDIKCEIACDEVPKASENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGTLSMANSGPNTNGSQ FFITYAKQPHLNGLYTVFGKVIHGFEVLDIMEKTQTGQGDRPLAEIRINRVTIHANPLAGNESKIRIDYSGHAHSSHFG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.002G149700 [exp]	0	1
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	3.31	0.9379
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.012G022400 [exp]	6.00	0.9264	Pt-HSP21.3
AT5G47830			unknown protein		Potri.014G024500 [exp]	8.36	0.9326
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	10.24	0.9290
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	11.31	0.8921
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	13.71	0.9305
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	14.59	0.9306
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	15.96	0.9049
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.015G022700 [exp]	19.74	0.8960
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	22.18	0.8833

Compare expression of checked genes

Potri.002G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.