Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01930 526 / 0 C2H2ZnF zinc finger protein-related (.1) AT4G31420 47 / 2e-05 C2H2ZnF Zinc finger protein 622 (.1.2) AT2G24500 45 / 0.0002 C2H2ZnF FZF Zinc finger protein 622 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275300 [exp] 49 / 8e-06 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.018G006300 [exp] 47 / 2e-05 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009236 [exp] 589 / 0 AT1G01930 576 / 0.0 zinc finger protein-related (.1) Lus10038006 [exp] 579 / 0 AT1G01930 575 / 0.0 zinc finger protein-related (.1) Lus10020150 [exp] 46 / 9e-05 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2) Lus10026949 [exp] 45 / 0.0001 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G149800.1 pacid=42778992 polypeptide=Potri.002G149800.1.p locus=Potri.002G149800 ID=Potri.002G149800.1.v4.1 annot-version=v4.1 ATGGCGACCGCACCTCTCCTCCCCACCACTAACTCAACTTCACAAGAGAAACGGCACCGTTCTATCTTCGACGTCCCCACCGATTTCTTCGATGCGTGTC GTTTACTCTCCCCCTCCTCCTCCCCCTCCCCTGCATCAACATCAGTAGCACCCGAAATTCCCTCTCCCATCGAAACTCTAGACGAAGTCGATACGATTTC CAAAAACGGCGTCGAAGTCACAATTCCTAGATGGACCTGTAACACTTGCAAAGCCGAATTCGATTCTCTCCAAGACCAGCGGTTTCACTTTAAATCCGAT TTTCATCGAATCAATGTTAAATTAAGCATTGCTGGAAAAGATATTGTTAAAGAGGAAGATTTTGATGAATCATTCAAAGATTGTGATATCTCGAGCGTGT CAGGATCAGAAGATGAAGCTGAAAAGGTGTCCATTTTGCGGACTGATGCGCAAAGAGGGTTTGTAGAGAGTGTGAAGCAGAAGTTGTTTATTCGTCTTAA GACGGGAGAGAGAGTTTCGATATGGAAGAGTCTGGTTTTGAATGATAGTGAAAGTGTTTGTTTTGAGAATGATAATGTTCTTGGGGGGTGTTTGAGAGAG AGTGAAGTGATTGAGAGGTTGAAGTTTTTGATTCATGAGGAGAGGAACGGGACGCGTCTGAGGATTGTGTTGCTTGCTAGTGGTGGACATTTTGTTGGGT GTGTTTTTGATGGGAATTCGCCTGTTCTTCATAAAACATTTCACAGATATGTTGTAAGAGCCAAAGCTGGTAAAAAGCAGTCATCTAAAGATGGGACTGG TAGAGCTGCACATTCTGCTGGAGCTTCACTTCGTCGGTATAATGAACTGGCTTTGAAGAAGGACATTCAAGAACTACTTGATGTTTGGAAGCCTTATTTT GACGCTTCATCATGTATTTACTTATATGCACCTTCAAGCAATCGGCAACTACTTTTTGATGGCAATAAAGCATATTTCAGCCATCAGCACCATGTTCGAA ATATACCATTGAGTATTAGGAGGCCTACTTTCAAAGAAGCACGACGCATTTACAACCAATTGGCACAAGTCACCTATGAAGTGGATGAGAAGGAAAGCCT ACCAGACACCATTGATGACTTGGTGTCAACCACAAGCACCATTACAAATAGCTGCCCTGGCCCCAGCAAAGAGGACTTGAACGACAGCATTAATAGTGCT GAATCTACCGAACCTTCTTCTATTAAAAAAAAATCTGATGATCTGCATGTATCAAGTGGGAGTGAAAGTGAAGTTGCTGGCATGACAACGCCTTTGCATG AAGCAACACAATCTGGTGATGTTCATCAGGTTTTGAAACTCCTAGAACAGGGTTTGGATCCTTGTATCAAAGATGAAAGGGGGCGGACCCCTTATATGCT GGCAAATGATAAGGAAGTCAGAAATACATTTAGACGCTTTATGGCTTTAAACATTGATAGATGGGATTGGCATGCTGCTAATGTGCCTAGTGCATTAACA AAAGAAATGGAGGAATCTCAAGCTGCTAAGCAGACAGAGAAAGAGGAAAAGAGGAAAGCTAGAGCAAAAGAATTGAAGAAATTACGTAAGGCTAGAGAAA AGAAAGCTCAGGCTGAGGCTGCATCATCCCAAAATGCTGCGGCAGTTCTAGTTAATCGAGCTACTCCAATTTCAGCTATCAAGGGACAATCTCAGCCTAG TGGAGGATCAAAAATATCTACAGAGGAACTTAAGAGGGCTGAAGCTATTGAGAGGGAAAAGAGAGCAGCTGCTGCAGAGAGGAGAATGGCAGCAGTTGCT GCTATCAATGCCCAAAGCAGTAGCACGAGCACCGTGCCAGCCATGGCACAACCCAAAAGTGGCTTGACATCAGATATAACATGCTCCTGTTGCAATGTGT CGTTAGCTGGTAAAGTTCCATTTCATAGATATAATTACAAGTACTGCAGTACGTCTTGCATGCATGTACATAGAGAGATCCTCGAGGATGAATAA
AA sequence Show only first row Show all	>Potri.002G149800.1 pacid=42778992 polypeptide=Potri.002G149800.1.p locus=Potri.002G149800 ID=Potri.002G149800.1.v4.1 annot-version=v4.1 MATAPLLPTTNSTSQEKRHRSIFDVPTDFFDACRLLSPSSSPSPASTSVAPEIPSPIETLDEVDTISKNGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSD FHRINVKLSIAGKDIVKEEDFDESFKDCDISSVSGSEDEAEKVSILRTDAQRGFVESVKQKLFIRLKTGERVSIWKSLVLNDSESVCFENDNVLGGCLRE SEVIERLKFLIHEERNGTRLRIVLLASGGHFVGCVFDGNSPVLHKTFHRYVVRAKAGKKQSSKDGTGRAAHSAGASLRRYNELALKKDIQELLDVWKPYF DASSCIYLYAPSSNRQLLFDGNKAYFSHQHHVRNIPLSIRRPTFKEARRIYNQLAQVTYEVDEKESLPDTIDDLVSTTSTITNSCPGPSKEDLNDSINSA ESTEPSSIKKKSDDLHVSSGSESEVAGMTTPLHEATQSGDVHQVLKLLEQGLDPCIKDERGRTPYMLANDKEVRNTFRRFMALNIDRWDWHAANVPSALT KEMEESQAAKQTEKEEKRKARAKELKKLRKAREKKAQAEAASSQNAAAVLVNRATPISAIKGQSQPSGGSKISTEELKRAEAIEREKRAAAAERRMAAVA AINAQSSSTSTVPAMAQPKSGLTSDITCSCCNVSLAGKVPFHRYNYKYCSTSCMHVHREILEDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	0	1
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	1.41	0.9084
AT5G13950			unknown protein		Potri.002G237800 [exp]	2.82	0.9082
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	5.29	0.8951
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	5.47	0.8871
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	5.47	0.9024
AT1G72390			unknown protein		Potri.001G165800 [exp]	8.06	0.8970
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	8.24	0.8738
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	8.71	0.8994
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	10.67	0.8955
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	11.61	0.8930

Compare expression of checked genes

Potri.002G149800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.