Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 503 / 2e-175 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 483 / 1e-167 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 478 / 1e-165 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45580 471 / 5e-163 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45570 468 / 7e-162 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 464 / 2e-160 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33730 380 / 2e-129 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G52970 368 / 2e-122 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 328 / 4e-107 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G25140 315 / 4e-102 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150200 [exp] 962 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 952 / 0 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 947 / 0 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 939 / 0 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 527 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 519 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 393 / 3e-132 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 372 / 2e-124 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 372 / 3e-124 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008935 [exp] 478 / 6e-166 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 473 / 1e-163 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 470 / 1e-162 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 464 / 4e-160 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 456 / 3e-157 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 456 / 3e-157 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 454 / 2e-156 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 447 / 1e-153 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 445 / 7e-153 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 433 / 6e-148 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G150300.1 pacid=42778577 polypeptide=Potri.002G150300.1.p locus=Potri.002G150300 ID=Potri.002G150300.1.v4.1 annot-version=v4.1 ATGGAGTACCTTTTTTACCTGCTACTAATTTCTTTTTGTTGGGCATGTCTGCACGTGCTCAACGCATCCGTTCTACTTCGCCGGAAGTCCGGATGCACCA TCCTCCCACCTGGCCCTCGCCAATTGCCGATAATCGGAAACATATTAGCCCTCGGTGACAAGCCCCACCGAACACTTGCTAAACTCTCACAAACTTATGG ACCTTTAATGACCCTCAAGCTTGGTAGGATAACCACAATAGTCATCTCCTCTCCGAACATTGCCAAAGAAGCACTACAGAAACATGACCAAGCCTTGTCT AGCAGAACAGTCCCAGATGCTGTTCGTGGACACCACAAAAACTCAATCTTATGGTTGCCTGCGTCGAGTCATTGGAAATTTCTCAAAAAACTCACTGCCA CACAAATGTTCACTTCGCAAAGGCTTGATGCCAGCCGAGCCCTCCGTGGAAAGAAGGTTCAAGAATTGCTAGAATATGTTCATGAAAAGTGCAACAAGGG ACATGCTGTCGACGTTGGTAGATCTGTTTTCACAACTGTCCTTAATTTAATTTCAAACACCTTCTTCTCTCTTGATATAGCCAATTACAATTCTGATTTG TCTCAAGAGTTCAGCTATCTTGTGGTGGGTGTCATGGAACAAATTGGCAAGGCAAATATTGCCGACTATTTCCCAATACTTCGATTAGTAGATCCACAAG GTATAAGACGAAAGACGAATAATTATTTGAAAAGATTAACTCAAATTTTTGATAGTATCATCAACGAGAGGACACGACTACGTTCTTCTTCGGTTGCATC CAAGGCAAGCCATGATGTACTTGATGCCCTGCTGATTCTAGCCAAAGAAAACAATACTGAATTGAGCTCCACTGACATACAGGTTTTGCTTCTGGATTTT TTCATTGCGGGCACTGACACTACCTCAAGCACAGTAGAGTGGGCAATGACAGAGTTATTACTGAACCCTGATAAAATGGTCAAAGCCAAAAATGAGCTCC AACAAGTCGAAGGACCAGTTCAAGAATCAGACATCTCCAAGTGTCCTTACCTTCAAGCAATAGTCAAAGAGACATTTCGGCTGCACCCACCAGCACCACT CCTGCTGCCCCGTAAAGCCGTATCCGAAGTAGAGATGCAAGGCTTCACAGTGCCCAAAAATGCACAAATACTAATCAATATTTGGGCAATAGGAAGAGAT CCAACCATATGGCCAGATCCTAATTCGTTCAAGCCTGAAAGGTTCTTAGAATGCCAAGCTGACGTGAAAGGAAGAGATTTTGAGCTAATTCCATTTGGAG CAGGAAGAAGGATTTGCCCTGGATTGCCTTTGGGCCACAAGATGGTGCATTTGGCGTTGGCATCTCTCATCCACTCTTTTGATTGGAAGATTGCTGATGA CTTGACACCAGAGGATATAGACACGAGTGAAACGTTTGGGATTACATTACATAAGAGTGAGCCTCTCCGGGCTATACCCATGAAAACGTGA
AA sequence Show only first row Show all	>Potri.002G150300.1 pacid=42778577 polypeptide=Potri.002G150300.1.p locus=Potri.002G150300 ID=Potri.002G150300.1.v4.1 annot-version=v4.1 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTILPPGPRQLPIIGNILALGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS SRTVPDAVRGHHKNSILWLPASSHWKFLKKLTATQMFTSQRLDASRALRGKKVQELLEYVHEKCNKGHAVDVGRSVFTTVLNLISNTFFSLDIANYNSDL SQEFSYLVVGVMEQIGKANIADYFPILRLVDPQGIRRKTNNYLKRLTQIFDSIINERTRLRSSSVASKASHDVLDALLILAKENNTELSSTDIQVLLLDF FIAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKCPYLQAIVKETFRLHPPAPLLLPRKAVSEVEMQGFTVPKNAQILINIWAIGRD PTIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKMVHLALASLIHSFDWKIADDLTPEDIDTSETFGITLHKSEPLRAIPMKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150100 [exp]	7.28	0.8600
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150200 [exp]	7.54	0.9515	CYP76T2,Pt-CYP76.4
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150500 [exp]	9.79	0.8743	CYP76.3
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	11.13	0.8749
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150400 [exp]	11.48	0.9438
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	14.07	0.8533
AT5G67550			unknown protein		Potri.017G023400 [exp]	18.33	0.8052
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	19.28	0.9104
AT1G66760			MATE efflux family protein (.1...		Potri.017G120600 [exp]	22.58	0.9048
AT1G58120			unknown protein		Potri.002G104500 [exp]	23.36	0.8935

Compare expression of checked genes

Potri.002G150300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.