Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 495 / 2e-172 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 482 / 4e-167 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 480 / 3e-166 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33720 478 / 2e-165 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 467 / 3e-161 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 463 / 6e-160 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33730 380 / 2e-129 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G52970 356 / 6e-118 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 321 / 3e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G25180 313 / 1e-101 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150200 [exp] 954 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 952 / 0 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 942 / 0 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 940 / 0 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 521 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 519 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 383 / 2e-128 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 373 / 3e-124 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 372 / 6e-124 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008935 [exp] 474 / 5e-164 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 468 / 1e-161 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 457 / 2e-157 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 457 / 2e-157 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 456 / 3e-157 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 451 / 3e-155 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 447 / 8e-154 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 442 / 1e-151 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 442 / 2e-151 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 430 / 7e-147 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G150400.1 pacid=42777070 polypeptide=Potri.002G150400.1.p locus=Potri.002G150400 ID=Potri.002G150400.1.v4.1 annot-version=v4.1 ATGGAGTACCTTTTTTACCTGCTACTAATTTCTTTTTGTTGGGCATGTCTACACGTGCTCAACGCATCCGTTCTACTTCGCCGGAAGTCCGGTTGCACCG TCCTCCCACCTGGCCCTCGCCAATTGCAGATAATTGGAAACATATTAGCCCTCGGTGACAAGCCCCACCGAACACTTGCTAAACTCTCACAAACTTATGG ACCTTTAATGACCCTCAAGCTTGGTAGGATAACCACAATAGTCATCTCCTCTCCGAATATTGCCAAAGAAGCATTACAGAAACATGACCAAGCCTTGTCT AGCAGAACAGTCCCAGATGCTCTTCGTGTACACCACAGAAACTCAATCTTATGGTTGCCTGCGTCGACTCATTGGAAATTTCTCAGAAAACTCACTGCCA CACAAATGTTCACTTCGCAAAGGCTTGATGCCAGCCAAGCCCTCCGTGGAAAGAAAGCTCAAGAAATGCTAGAATATGTTCATGAAAATTGCAACAACGG ACACGCTGTTGACATTCGTCGATCTGTTTTCACAACTTCCCTTAATTTAATTTCAAACACCTTCTTCTCTCTTGATATAGCCAATTACAATTCTGATTTG TCTCAAGAATTCAGCGATCTCGTGGTTGGTGTCACGGAACAAATTGGCAAGCCAAATATTGCCGACTATTTCCCAATACTTCGATTAGTAGATCCACAAG GTGTAAGACGAAAGACGAATAATTATTTGAAAAGATTAACTCAAATTTTTGATAGTATCATCAACGAGAGGACACGACCACGTTCTTCTTCGGTTGCATC CAAGGCAAGCCATGATATACTTGATGCCCTGCTGATTCTAGCCAAAGAAAACAATACTGAATTGAGCTCCACTGACATACAGGTTTTGCTTATTGATTTT TTCATTGGGGGCACTGACACTACCTCAAGCACAGTAGAGTGGGCAATGACAGAGTTATTACTGAACCCTGATAAAATGGTCAAAGCCAAAAATGAGCTCC AACAAGTCGAAGGACCAGTTCAAGAATCAGACATCTCCAAGTGTCCTTACCTTCAAGCAATAGTCAAAGAGACATTTCGGCTGCACCCACCAGTTCCACT CCTGCTGCCCCGTAAAGCCGTATCCGAAGTAGAGATGCAAGGCTTCACAGTGCCAAAAAATGCTCAAATACTAATCAATATTTGGGCAATAGGAAGAGAT CCAGCCATATGGCCAGATCCTAATTCGTTCAAGCCTGAAAGGTTCCTAGAATGCCAAGCTGACGTGAAAGGAAGAGATTTTGAGCTAATTCCATTTGGAG CAGGAAGAAGGATTTGCCCTGGATTGCCTTTGGGCCACAAGATGGTGCATTTGACGTTGGCATCTCTCATCCACTCTTTTGATTGGAAGATTGCTGATGA CTTGACACCAGAGGATATAGACATGAGTGAAACGTTTGGGCTTACATTACATAAGAGTGAGCCTCTCCGGGCTATACCCATGAAAACGTGA
AA sequence Show only first row Show all	>Potri.002G150400.1 pacid=42777070 polypeptide=Potri.002G150400.1.p locus=Potri.002G150400 ID=Potri.002G150400.1.v4.1 annot-version=v4.1 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTVLPPGPRQLQIIGNILALGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS SRTVPDALRVHHRNSILWLPASTHWKFLRKLTATQMFTSQRLDASQALRGKKAQEMLEYVHENCNNGHAVDIRRSVFTTSLNLISNTFFSLDIANYNSDL SQEFSDLVVGVTEQIGKPNIADYFPILRLVDPQGVRRKTNNYLKRLTQIFDSIINERTRPRSSSVASKASHDILDALLILAKENNTELSSTDIQVLLIDF FIGGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKCPYLQAIVKETFRLHPPVPLLLPRKAVSEVEMQGFTVPKNAQILINIWAIGRD PAIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKMVHLTLASLIHSFDWKIADDLTPEDIDMSETFGLTLHKSEPLRAIPMKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150400 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150200 [exp]	1.00	0.9944	CYP76T2,Pt-CYP76.4
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	2.44	0.9809
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	11.48	0.9438
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	12.36	0.9772
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	14.69	0.9758
AT5G21105			Plant L-ascorbate oxidase (.1....		Potri.001G219300 [exp]	15.58	0.9312	AO1.2
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	18.16	0.9530
AT1G58120			unknown protein		Potri.002G104500 [exp]	19.44	0.9470
					Potri.007G014501 [exp]	19.62	0.9754
					Potri.017G120650 [exp]	23.45	0.9754

Compare expression of checked genes

Potri.002G150400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.