Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61050 624 / 0 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61030 340 / 2e-111 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 335 / 3e-108 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT5G11100 277 / 1e-86 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 259 / 4e-80 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 187 / 6e-53 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 181 / 1e-50 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 155 / 4e-41 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G50260 73 / 2e-13 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT3G19830 69 / 3e-12 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072800 [exp] 781 / 0 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.006G063900 [exp] 275 / 5e-86 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 269 / 1e-83 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 252 / 4e-77 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G223900 [exp] 189 / 9e-54 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 185 / 5e-52 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 183 / 2e-51 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 175 / 2e-48 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 174 / 5e-48 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036532 [exp] 632 / 0 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10041396 [exp] 628 / 0 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10008055 [exp] 267 / 3e-83 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 267 / 9e-83 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 248 / 3e-76 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 245 / 2e-74 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 212 / 2e-63 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040414 [exp] 189 / 2e-53 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 186 / 2e-52 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 186 / 2e-52 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G150700.5 pacid=42780184 polypeptide=Potri.002G150700.5.p locus=Potri.002G150700 ID=Potri.002G150700.5.v4.1 annot-version=v4.1 ATGGGGCTGATTTCAGGGTTATTTTTGGGGATCGTCTTCGGGATCGGGTTGATGGCTGGATGGAAACACATGATGCAGTACCGAAGCACCAAACGAGTTG CTAAGGCAGTGGATATAAAACTCCTTGGGTCACTCAATAGAGATGATTTGAAGAAAATATGTGGTGATAATTTTCCTGATTGGATTTCTTTTCCTGCTTT TGAACAGGTGAAATGGCTAAATAAGCAATTGGGCAAATTATGGCCTTTTGTTGCAGAAGCAGCTACAGCGGTGGTTAAAGAATCTGTTGAACCACTATTG GAAGACTACCGACCCCCAGGGATTACTTCTCTAAAGTTTAACAAATTTTCTCTCGGTACTGTGCCGCCTAAGATTGAAGGAATTCGTGTCCAGAGTCTCA AGCAAGGTCAAGTTACCATGGATATTGATTTGCGGTGGTGTGGTGATCCAAGCATCATTCTAGGCGTTGAAGCTGCACTTGTTGCTTCCATACCCATTCA ATTGAAAGATCTTGAAGTTTACACTGTTATCCGTGTTATCTTTCAACTTGCTGAGGAGATTCCATGTATTTCTGCTGTTGTGATTGCTCTACTTTCTGAG CCAAAGCCAAAGATTGAATACATTCTCAAGGCTGTTGGTGGAAGCTTAACAGCACTTCCTGGAGTCTCAGATATGATTGATGATACTGTGAATTCGATTG TTACGGATATGCTTCAGTGGCCCCACAGGATTGTTGTTCCTATTGGTGGTATCCCTGTTGACATAAGTGAATTAGAGCTTAGACCTCAAGGAAAGCTTAC AGTGACCGTAGTGAAGGCAAATGACTTGAAGAACATGGAAATGATTGGAAAATCTGATCCTTATGCAGTTGTATATGTTCGGCCAATGTTCAAGGTTAAA ACTCAAGTCATTGATAATAACCTGAATCCTGTTTGGAATCAAACATTTGATTTGATTGCTGAAGACAAGGAGACGCAATCACTTATTCTTGAGGTCTTTG ATAAGGACATTGGGCAAGACAAGAGATTAGGAAGAGCAAAATTAGCTTTAAATGAGCTGGAAGCCGAAACTTGGAAGGAGCTGGAGTTCGGACTGTTGTC ATCGTTTGATACATTGAAGGTTAAGGATAAGAAGGATAGAGGAACTATTACAATTAAGGTTTTTTACCATGAATTTAACAAGGAAGAGTCGTTGGCTGCT CTAGAAGAAGAGAAGCAGATCATAGAGCAACGAAAGAAACTAAAAGAAGCTGGAGTTATTGGGAGCACAATGGATGCGCTTGATGGGGCAGCATCACTGG TGGGATCAGGAGTTGGGCTTGTGGGAGGTGGTGTTGGTGCTGGAGTTGGGTTTGTGGGAAGTGGCTTAGGAGCTGTTGGTAGTGGCCTGAGCAAAGCAGG AAGGTTCATGGGCAGGACAATCACCGGACAATCCAGCAAGAGAACTGGCAACACAACTCCAGTCAATAGTGTGCAAGAAAACGGTGGAGCAAAGCCCCTG TAG
AA sequence Show only first row Show all	>Potri.002G150700.5 pacid=42780184 polypeptide=Potri.002G150700.5.p locus=Potri.002G150700 ID=Potri.002G150700.5.v4.1 annot-version=v4.1 MGLISGLFLGIVFGIGLMAGWKHMMQYRSTKRVAKAVDIKLLGSLNRDDLKKICGDNFPDWISFPAFEQVKWLNKQLGKLWPFVAEAATAVVKESVEPLL EDYRPPGITSLKFNKFSLGTVPPKIEGIRVQSLKQGQVTMDIDLRWCGDPSIILGVEAALVASIPIQLKDLEVYTVIRVIFQLAEEIPCISAVVIALLSE PKPKIEYILKAVGGSLTALPGVSDMIDDTVNSIVTDMLQWPHRIVVPIGGIPVDISELELRPQGKLTVTVVKANDLKNMEMIGKSDPYAVVYVRPMFKVK TQVIDNNLNPVWNQTFDLIAEDKETQSLILEVFDKDIGQDKRLGRAKLALNELEAETWKELEFGLLSSFDTLKVKDKKDRGTITIKVFYHEFNKEESLAA LEEEKQIIEQRKKLKEAGVIGSTMDALDGAASLVGSGVGLVGGGVGAGVGFVGSGLGAVGSGLSKAGRFMGRTITGQSSKRTGNTTPVNSVQENGGAKPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.002G150700 [exp]	0	1
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.006G055000 [exp]	1.41	0.7700
AT1G75800			Pathogenesis-related thaumatin...		Potri.002G020500 [exp]	5.19	0.7741
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.009G026600 [exp]	9.48	0.7137
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	21.77	0.7665
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	25.29	0.6587
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.016G135200 [exp]	33.68	0.7339	PtEXPA13,EXP2.9
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	40.09	0.7064
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.001G469800 [exp]	41.37	0.7183
					Potri.011G097766 [exp]	50.10	0.5623
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	64.45	0.7032

Compare expression of checked genes

Potri.002G150700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.