Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45590 564 / 0 Protein kinase superfamily protein (.1) AT5G51770 375 / 3e-121 Protein kinase superfamily protein (.1) AT4G25390 263 / 3e-80 Protein kinase superfamily protein (.1.2) AT1G80870 187 / 1e-50 Protein kinase superfamily protein (.1) AT1G61860 152 / 3e-40 Protein kinase superfamily protein (.1) AT3G58690 146 / 4e-38 Protein kinase superfamily protein (.1) AT5G13160 145 / 2e-37 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT4G23130 148 / 3e-37 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT3G20530 143 / 4e-37 Protein kinase superfamily protein (.1) AT1G24030 140 / 1e-36 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072900 [exp] 947 / 0 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 519 / 1e-176 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 506 / 1e-171 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.003G183100 [exp] 166 / 2e-43 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 166 / 3e-43 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.001G437950 [exp] 148 / 4e-39 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.004G026200 [exp] 152 / 9e-39 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G060800 [exp] 148 / 2e-38 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 149 / 3e-38 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041395 [exp] 639 / 0 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10036533 [exp] 450 / 8e-152 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10027393 [exp] 450 / 4e-150 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031679 [exp] 222 / 3e-67 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10031678 [exp] 209 / 5e-62 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10026069 [exp] 177 / 4e-47 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 167 / 1e-43 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 149 / 3e-38 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 149 / 3e-38 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 147 / 6e-38 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G150800.1 pacid=42778376 polypeptide=Potri.002G150800.1.p locus=Potri.002G150800 ID=Potri.002G150800.1.v4.1 annot-version=v4.1 ATGCCATCTCGCCACCTCCGATCTCTATCAGAACCACCACCACCACCACTCCACCACCACATCCGCCTCCTCCCTCCACTCCTTGCTGGAACACTAACGC TCATTCTCATTTTCCTTATTGTACTTGTAGTCTTGCTCTATCGCAAAATCACGCGCAACCGTACAGCTCCAATTACAAGATCTCCAAATCACCACCACCA CCACCAATGCCGCTGCTACTCCTACTCTCTCCTCCGCCGTGCAACTTCCTCATTCTCACCATCCAACCGCCTCGGACACGGCGGATTTGGATCAGTCTAC AAAGCTACACTTCCTAACACTAATCAACATTTAGCTGTTAAATTGATGGACCAAAACGGTTCTCTTCAAGGTGAGAGAGAGTTCCATAACGAACTCTCAA TTGCTTCTTGTTTAGATTCTCCTAACATTGTGTCCCTCCTTGGCTACTCATGTTCGCGAAAGAAGAAATTAGTTTTAGTCTATGAGTTGATGGAGAATAG AAGCTTACAAGAAGCCTTGTTTGATAGGAAATGTGAAGAGTTGATGAATTGGAAGGTTAGATTTGAGTTAGTGATTGGTGTAGCTAAAGGACTTGAGTAT TTGCATCATTTTTGTAGTCCTCCGGTGATTCATGGGGATATTAAACCTGGTAATATCTTGCTTGATTCGTGTTTTAACGCGAAAATTGGAGATTTTGGTC TAGCGAGATTGAAGATTGAGGAGAGTAATGGTTTCCTGGAGAAGAAAGAGGGTTTTGGAGAGGATAATGGGTCGATTTTGGAGGAGACGGAGAGTGTGGC AAGTGGGTGCGGAGAGAGTGGGATTTTAGACGTTGGTGGTGTTGTGAGATCGCCGGAGAGTTTTGGTGTTAGGGTTTTGGATTCGGATGCGTCACCGGAG ATGTTTTCAGTGGTTTCGCCGGAGGTTGGGGTGGATAAGGGGAGTATATCGGAGGCGGGTTTTGATAAGATGAGTGTTGATAGTGGAAGAGATTTGATTG GTGGAGGGAAGAAAAGTGGGTCGAGGAGGGATTGGTGGTGGAAACAGGATAACGGAGGTGGATCGGAGTCGGGGAGAGTGAAGGATTATGTGATGGAGTG GATTGGAAGTGAGATTAATAAGGAGAGACCTAAGCAAGAATGGAATGCAGCGTCTCCAATTTCCAGTGATAATAAGTTGTTGAGCAAAAAAAGTTTGAAG AGTGAGCCAAAGAAGCATAAGAAGAAATTGGAATGGTGGGCTTCTTTAGATGAGGAAAGAATGAAGAAGAAGGAGAAGAATAGAAAGCCTAGAGAGTGGT GGAAGGAGGAGTTTTGTGAGGAGCTGACGAAGAAAAAGAAGAAGAGAGGACTTAGTTCGAGTAATAGTGGAGATTTATGGTGGCAAAAGGATGATGATGG GGTGCAAGAAAGGAAGAAGAAGAGGAAGAGCAAGGGTAGTAGAGGTAGTATGGATCGGTGGTTGGATGGTTTCAGTGGTGAATTTAGAAATGGGAGAAGA AACAGCCAGGATTGGGCTAGTGGAGAGATCCCCAAGAGTGGTGGTATTAGTAGCACGCCTAGCATGAGAGGAACGGTGTGTTATATTGCTCCTGAATATG GTGGAGGTAGCCTGTTATCAGAGAAGTGTGATGTTTATAGTTTCGGTGTTCTGCTCCTTGTGGTGGTTTCTGGGAGAAGACCGCTGCAAGTAACCGCCTC ACCAATGTCAGAATTTGAGAGGGCTAATCTAATCTCTTGGGCCAGGCAACTTGCATACAATGGGAAGCTATTGGATATTGTTGATACTTCAGTGCATTCG TTGGATAAGGATCAGGCATTGCTTTGCATTACAATTGGTCTACTGTGTTTGCAGAAATCGCCTAGCAAACGGCCCACGATGAAAGAAATTGTGGGGATGC TTTCTGGGGAGGCAGAGCCACCCCACTTGCCATTTGAATTTTCACCATCACCGCCGTCCAATTTTCCATTCAAATCCCGAAGAAAGGCTCGGTGA
AA sequence Show only first row Show all	>Potri.002G150800.1 pacid=42778376 polypeptide=Potri.002G150800.1.p locus=Potri.002G150800 ID=Potri.002G150800.1.v4.1 annot-version=v4.1 MPSRHLRSLSEPPPPPLHHHIRLLPPLLAGTLTLILIFLIVLVVLLYRKITRNRTAPITRSPNHHHHHQCRCYSYSLLRRATSSFSPSNRLGHGGFGSVY KATLPNTNQHLAVKLMDQNGSLQGEREFHNELSIASCLDSPNIVSLLGYSCSRKKKLVLVYELMENRSLQEALFDRKCEELMNWKVRFELVIGVAKGLEY LHHFCSPPVIHGDIKPGNILLDSCFNAKIGDFGLARLKIEESNGFLEKKEGFGEDNGSILEETESVASGCGESGILDVGGVVRSPESFGVRVLDSDASPE MFSVVSPEVGVDKGSISEAGFDKMSVDSGRDLIGGGKKSGSRRDWWWKQDNGGGSESGRVKDYVMEWIGSEINKERPKQEWNAASPISSDNKLLSKKSLK SEPKKHKKKLEWWASLDEERMKKKEKNRKPREWWKEEFCEELTKKKKKRGLSSSNSGDLWWQKDDDGVQERKKKRKSKGSRGSMDRWLDGFSGEFRNGRR NSQDWASGEIPKSGGISSTPSMRGTVCYIAPEYGGGSLLSEKCDVYSFGVLLLVVVSGRRPLQVTASPMSEFERANLISWARQLAYNGKLLDIVDTSVHS LDKDQALLCITIGLLCLQKSPSKRPTMKEIVGMLSGEAEPPHLPFEFSPSPPSNFPFKSRRKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45590			Protein kinase superfamily pro...		Potri.002G150800 [exp]	0	1
AT5G22760			PHD finger family protein (.1)		Potri.009G150200 [exp]	4.24	0.6607
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	10.67	0.6998
AT5G51410			LUC7 N_terminus domain-contain...		Potri.001G124300 [exp]	22.89	0.6656
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	24.33	0.6954
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241700 [exp]	26.11	0.5766
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	26.45	0.6607
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	35.32	0.6399
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	38.49	0.6131
ATCG01000		ATCG01000.1, YC...	Ycf1 protein (.1)		Potri.002G008176 [exp]	40.81	0.6603
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.009G059400 [exp]	42.96	0.5717

Compare expression of checked genes

Potri.002G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.