Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45620 628 / 0 Nucleotidyltransferase family protein (.1) AT3G45750 119 / 1e-27 Nucleotidyltransferase family protein (.1.2) AT3G45760 97 / 4e-21 Nucleotidyltransferase family protein (.1.2) AT5G53770 87 / 1e-17 Nucleotidyltransferase family protein (.1) AT2G39740 86 / 2e-17 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073300 [exp] 1004 / 0 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 77 / 1e-14 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 77 / 1e-14 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015854 [exp] 707 / 0 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 691 / 0 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 591 / 0 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 84 / 1e-16 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 82 / 5e-16 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 74 / 1e-13 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 62 / 1e-09 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [poplar] [flax] PAP_assoc Cid1 family poly A polymerase
Representative CDS sequence Show only first row Show all	>Potri.002G151000.1 pacid=42778357 polypeptide=Potri.002G151000.1.p locus=Potri.002G151000 ID=Potri.002G151000.1.v4.1 annot-version=v4.1 ATGTCCGGTGGCGGCGGTGATGCTCCACTTATCCCGCCCGCGAATAATGGCGGCGAATTTCTACTCTCTTTACTCCGAAGACCTAACCACCACCCAACAC CATCGCAGCAACAGCAGCAGCAATCTCAGTCTCTTTTTATGACCCCGCAATTACAAAATCACAATCAAAATCAACATAATCCTCAGCCTCAGCCTCTCGG TTTTGATCCTGCAGTTGCAGCTGTTGGCCCCAGTCTACCTGTACCGTCTCGTCAAGTGTTGCATCCCAACGGCCGTGATCTTCTCTCTAATTCGCCTCCT CTTTGGCCCCATAATCTCGGCTTTCCGCAGAAAAACAATGCTTTTCCTCACCCCCGTGGAAATCAATGTTTAGCAGAGGATTTGCAAAGATTAGGGTTTT CAAATGTGGAGACTAGAGCTAATAATAATAATAATGACGATTCGATCCAGCATCTACTTCAACAGAAGCAACAGTTCGAGCAAAAGCTACAGTTCGGCTC GTTTTCGAGTGAGATTCAAAGCCCTGCTGAGGTTTTAGTGAATGCGAATTTGGTGCGAGAAGTAGGACCAGGGGGCAGAAGCTTCAATGGATTGGAAAGG AATAGGCATCTCGAGAAGCAAGCAAACTCGAATTCGAGGAGGAATTCTGAAGTGCGACAGCCAGGAGGCAGCAGTGGAGGATGGGGAAACCAGCACCGAA ACCAACACCTGCACCAGGAACAGCACCGGAATTATAGGTCTCCGCCTCCCGGGTTCTCCAATAAGCCTAGAGGTGGAGGGAATTGGGATTACGGAAGTAG GAGGAGAGAATTAGAGCTTAATATTACCAGGGAAAACGGAGATTATAGTGAAATGAATAATGAGAAAGTGAGGAGAAGTGAGGGGTCAGTTGAGCTGGGG CTTACGAGACAGCTTGATCGTCCAGGTCCACCTGCCGGTAGTAATCTGCATTCCGTTTTGGGTTCGGAGATTGGGGAATCCTTGATCAATTTGGATGGTG AAAATGGTGAAGATGGAAAGGATGATGGAGGGGAATTGGATGATCTTGGTGAAGAGCTGGTGGATTCTTTGTTGCTTAATGGTCAATCTGAAGGCAAGAA AGACAAGAAGCAAAGTAACAAGGAGTCTAGATCAGATAACAGGGGGAAAAAGATACTTAGTCAGAGGATGAGAATGCTTAAAAAGCAAACGCAATGTTGT TTAGATATCGACAGACTAAATGCTGCTTTTCTTGCAATTTATGAGTCATTGATACCGCCAGAGGAAGAAAAAATGAAGCAGGAGCTATTTTTGATGTCAC TGGAGAAACTAGTCAACAAGGAATGGCCTGAAGCTCGATTATACCTATATGGTTCAGGTGCAAATTCATTTGGAGTTTCAAAGAGTGATATAGATGTTTG CCTCGCAATTGAGGATGCTGAGATTAACAAGTCTGAGGTCTTGTTAAAGTTGGCTGATATATTGCAGTCAGGCAACCTCCAGAATGTGCAGGCATTGACT CGGGCCAGGGTTCCCATAGTAAAGCTTATGGATCCCGCGACTGGCATCTCCTGTGACATATGCATAAACAATGTTTTGGCTGTTGTGAATACAAAGCTTC TTCGGGATTATGCACAAATAGATGTCAGATTACGGCAATTAGCTTTTATAGTGAAACACTGGGCCAAGTCAAGAGGAGTCAATGCAACTTACCAAGGGAC CCTATCTAGTTATGCGTATGTTTTAATGTGCATTCATTTTTTACAGCAGCGTAGACCTGCTATCCTTCCATGCTTACAGGAGATGAGAACGACATACTCT GTCACTGTAGATGACATTCAATGTGCTTACTTTGATCAAGTTGAAAAACTCCGTGGTTTTGGATCTCGAAACAAGGAAACAATTGCTCGATTAGTATGGG CATTTTTCAATTATTGGGCATATGGTCATGATTATGCAAATGCTGTTATATCTGTTCGTACAGGAAGCATACTCAGCAAACACGAAAAGGAATGGACAAG GAGGATTGGGAATGATCGCCATTTGATATGCATAGAGGACCCCTTTGAGATATCTCATGACCTTGGTAGAGTCGTGGATAAATTCAGCATAAAAGTTCTG AGAGAAGAATTTGAACGTGCTGCAGATATCTTGCAATATGATCCAAATCCCTGTGCAACGCTCTTTGAACCCTATATTCCCAGTTGA
AA sequence Show only first row Show all	>Potri.002G151000.1 pacid=42778357 polypeptide=Potri.002G151000.1.p locus=Potri.002G151000 ID=Potri.002G151000.1.v4.1 annot-version=v4.1 MSGGGGDAPLIPPANNGGEFLLSLLRRPNHHPTPSQQQQQQSQSLFMTPQLQNHNQNQHNPQPQPLGFDPAVAAVGPSLPVPSRQVLHPNGRDLLSNSPP LWPHNLGFPQKNNAFPHPRGNQCLAEDLQRLGFSNVETRANNNNNDDSIQHLLQQKQQFEQKLQFGSFSSEIQSPAEVLVNANLVREVGPGGRSFNGLER NRHLEKQANSNSRRNSEVRQPGGSSGGWGNQHRNQHLHQEQHRNYRSPPPGFSNKPRGGGNWDYGSRRRELELNITRENGDYSEMNNEKVRRSEGSVELG LTRQLDRPGPPAGSNLHSVLGSEIGESLINLDGENGEDGKDDGGELDDLGEELVDSLLLNGQSEGKKDKKQSNKESRSDNRGKKILSQRMRMLKKQTQCC LDIDRLNAAFLAIYESLIPPEEEKMKQELFLMSLEKLVNKEWPEARLYLYGSGANSFGVSKSDIDVCLAIEDAEINKSEVLLKLADILQSGNLQNVQALT RARVPIVKLMDPATGISCDICINNVLAVVNTKLLRDYAQIDVRLRQLAFIVKHWAKSRGVNATYQGTLSSYAYVLMCIHFLQQRRPAILPCLQEMRTTYS VTVDDIQCAYFDQVEKLRGFGSRNKETIARLVWAFFNYWAYGHDYANAVISVRTGSILSKHEKEWTRRIGNDRHLICIEDPFEISHDLGRVVDKFSIKVL REEFERAADILQYDPNPCATLFEPYIPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45620			Nucleotidyltransferase family ...		Potri.002G151000 [exp]	0	1
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	19.23	0.8161
					Potri.010G192501 [exp]	22.13	0.7827
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	22.80	0.7948
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	23.36	0.7507
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	28.93	0.7867
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	32.84	0.7769
AT3G46920			Protein kinase superfamily pro...		Potri.006G190200 [exp]	33.67	0.7619
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Potri.016G073000 [exp]	35.00	0.6881
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	37.49	0.7545
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	40.69	0.7719

Compare expression of checked genes

Potri.002G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.