Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA20ox2-1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25420 504 / 7e-180 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 495 / 2e-176 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G07200 467 / 2e-165 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 465 / 1e-164 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 334 / 8e-113 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 182 / 3e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 172 / 2e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G24530 170 / 8e-50 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 167 / 3e-48 ATJRG21 jasmonate-regulated gene 21 (.1) AT4G10500 166 / 6e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073700 [exp] 686 / 0 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G134600 [exp] 568 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 548 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 407 / 8e-142 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 403 / 3e-140 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 387 / 6e-134 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 373 / 9e-129 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.011G150100 [exp] 191 / 9e-58 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 182 / 1e-54 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 548 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 542 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10036539 [exp] 534 / 0 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10041390 [exp] 533 / 0 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10015016 [exp] 499 / 3e-178 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 498 / 1e-177 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 498 / 1e-177 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10038894 [exp] 352 / 3e-120 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10015252 [exp] 176 / 8e-52 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10005037 [exp] 174 / 1e-50 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G151300.1 pacid=42777586 polypeptide=Potri.002G151300.1.p locus=Potri.002G151300 ID=Potri.002G151300.1.v4.1 annot-version=v4.1 ATGGTAATGCCTCCTACTCTTCCTCCTCCTCGACAGCCATTAGTATTTGATGCTTCAATTCTTCAACACCAAGCCAATATACCCTCTCAGTTCATTTGGC CTGACCACGAAAAACCATGCCTTGAATCCCCAAAACTTGCAATCCCCCCTATTGATTTTGGAAGCTTCCTCACTGGAGATCCTTTGGCAGTCTCAAAAGC TACTCAGCTAGTAAATGAGGCATGCAAGAAGCATGGATTCTTTCTAGTTGTTAACCATGGAGTTGATTCAAAGCTTATAGCTAAAGCTCATGAGTATATG AACATGTTTTTTGGCATACAACTCTCAGAGAAGCAAAGAGCTCAAAGAAAGATAGGAGAGCAATATGGGTATGCTAGTAGCTTCACTGGAAGATTCTCCT CCAAACTTCCATGGAAAGAAACACTTTCTTTCCGATATTGTGCTGACAATCAGTCTTCTGACATCGTCCAAGAATACTTCTTGAATGTAATGGGAGAAAA TTTCAAACAATTCGGGAAGGTTTACCAAGAATATTGTGAAGCCATGAACACTCTTTCTCTTGGAATTATGGAGCTATTAGGAGTAAGTCTAGGAGTTGGA AGAGAATATTTTAGAGATTTCTTCGAAGGAAACGATTCGATAATGAGACTGAATTACTACCCTCCTTGCCAAAAGCCGGATTTAACTCTTGGCACTGGGC CTCATTGTGATCCCACATCCTTAACAATCCTCCATCAAGATCATGTCGGTGGCCTTCAAGTGTTCGTCGATGAAAAATGGCACTCCGTCAGTCCTGATCC GGAAGCTTTCGTCGTCAACATCGGTGACACATTCACGGCTCTATCAAATGGCATTTTCAAGAGTTGCTTGCATAGAGCGGTGGTAAATAATGTAACAGTA AGGAAATCCCTTGCTTTCTTTCTCTGTCCAAAACTGGATAAGGTGGTGAAGCCACCAAATACCTTGATCGACTCTAAGAATCCGAGGGTATATCCGGACT TCACATGGCCAACTTTGTCAGAATTCACACAGAAACATTATAGGGCCGACATGAAAACCCTAGATGTCTTCACAACCTGGCTTCAACAAAAAAACAATTA G
AA sequence Show only first row Show all	>Potri.002G151300.1 pacid=42777586 polypeptide=Potri.002G151300.1.p locus=Potri.002G151300 ID=Potri.002G151300.1.v4.1 annot-version=v4.1 MVMPPTLPPPRQPLVFDASILQHQANIPSQFIWPDHEKPCLESPKLAIPPIDFGSFLTGDPLAVSKATQLVNEACKKHGFFLVVNHGVDSKLIAKAHEYM NMFFGIQLSEKQRAQRKIGEQYGYASSFTGRFSSKLPWKETLSFRYCADNQSSDIVQEYFLNVMGENFKQFGKVYQEYCEAMNTLSLGIMELLGVSLGVG REYFRDFFEGNDSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDHVGGLQVFVDEKWHSVSPDPEAFVVNIGDTFTALSNGIFKSCLHRAVVNNVTV RKSLAFFLCPKLDKVVKPPNTLIDSKNPRVYPDFTWPTLSEFTQKHYRADMKTLDVFTTWLQQKNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.002G151300 [exp]	0	1	GA20ox2-1
AT3G09720			P-loop containing nucleoside t...		Potri.019G064900 [exp]	6.00	0.8401
AT5G57770			Plant protein of unknown funct...		Potri.018G099000 [exp]	6.92	0.8249
AT1G17285			unknown protein		Potri.001G162300 [exp]	10.44	0.8505
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	11.83	0.8268	Pt-EIF3.6
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.010G036801 [exp]	22.53	0.8456
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.001G315200 [exp]	25.49	0.8194
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.002G244600 [exp]	26.94	0.7981
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	27.87	0.8116
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	28.14	0.8236
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081466 [exp]	29.93	0.8186

Compare expression of checked genes

Potri.002G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.