Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61130 1018 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 689 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT5G47780 630 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 610 / 0 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 473 / 3e-160 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 450 / 1e-151 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 444 / 2e-149 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 434 / 3e-145 GAUT9 galacturonosyltransferase 9 (.1) AT2G30575 416 / 2e-137 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 402 / 3e-132 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073800 [exp] 1213 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 706 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 629 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 584 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 472 / 7e-160 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.015G060800 [exp] 457 / 3e-154 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 457 / 3e-154 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.004G111000 [exp] 455 / 5e-153 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.005G218900 [exp] 452 / 2e-151 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009311 [exp] 1036 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 1031 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 1026 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 707 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 675 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038739 [exp] 626 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10011834 [exp] 468 / 3e-158 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10013506 [exp] 458 / 1e-154 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 458 / 1e-154 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 452 / 3e-152 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.002G151400.1 pacid=42777691 polypeptide=Potri.002G151400.1.p locus=Potri.002G151400 ID=Potri.002G151400.1.v4.1 annot-version=v4.1 ATGGCGTTGAAGCGGGGATTTTCAATTTCCGGCTTGAACAAGAACCGACGTGGTGGATCTAGATTGCCGATTGTAGTCGTGATATTCTTCTGCGTTTTGT CTCCGTTGATTTTCTTTGTCGGTCGAGGGCTCTATACAACAAGCTCTTCTACTGATCAAAATTTGAATGCAGTTGGTTCCGGTAAGCAGCATTTGAATTG GAGAGAACGGCTGGCCTTGCTACATGTGAAATCGATTTTCTCAAAAGAGGTCATTGATGTTATCACATCCAGCACAACTGATTTGGGACCTTTGAGTCTT GATTCTTTTAGAAAAAACAATTTGTCTGCCTCGTGGAAAGTTATTGGCATAGATTCTTCAGTCGAGGATAATGCTGCTTCTGAGCCAAACCAAACAGCTA CAGTGGTCAAGCAGGAAGCACCTAAGGGAAAAGAAGACAACATTTCTGATGATGATTCTCGATCTGGTGACACACCTGCAAAACTAGCTCGTAGGCAATT GAGGGAGAAACGACGTGAAAAGCGTGCTGTGGAGTTATTGCGCCAAGATGATGAAGCGATTGCAAGGCTTGAAAGTGCCGCCATTGAACGCTCAAAATTA GTTGATGGTGCTGTTTTGGGCAAATACAGTATATGGAGGAAAGAAATGGATAGTGAGAACTCTGATTCAACAGTACGCTTAATGCGTGATCAGATGATAA TGGCAAGGGTGTATTTGAGTATTGCAAAGATGAAACGCAAGCTTGACTTGCTACAGGAACTTCAGACTCGGATCAAAGAGAGTCAGCGTGTCCTAGGAGA TTCTTTGGCTGATTCTGATCTACATCCGAGTGTGCCTGAGAAGATAAAAGCTATGGGCCAAGTCCTGTCAAAAGCAAGAGAGCTATTGTATGACTGCAAG TTGGTCACCGGAAAGCTGAGAGCAATGCTTCAAACTGCAGATGAACAAGTTAGGAGCTTAAAAAAACAGAGCACATTCCTTAGTCAGTTGGCCGCCAAAA CAGTTCCAAATGGAATCCATTGCTTGTCTATGCGCCTAACAATTGATTACTATCTCCTTCCTCTTGAGAAGAGAAAGTTTCCTAGAAGTGAGAATTTGGA AAATCCAAATCTTTACCATTACGCTCTCTTCTCTGACAATGTCTTGGCTGCATCAGTTGTTGTCAACTCAACCATCATGAATGCCAAGGATTCTTCCAAA CATGTCTTTCATCTTGTTACTGATAAACTTAACTTCGGAGCGATGAATATGTGGTTTCTACTGAATCCTCCTGGAAAAGCTACTATCCATGTTGAAAATG TAGATGAATTCAAGTGGCTTAATTCCTCCTACTGCCCAGTTCTGCGTCAGCTTGAATCTGCTGCAATGAAAGAGTATTACTTCAAAGCAAATCATCCAAC TTCTCTCTCATCTGGCTCTTCAAATCTGAAGTATCGGAACCCTAAGTATCTTTCAATGCTTAACCATTTGAGGTTCTATCTCCCAGAGGTCTATCCCAAG TTGGATAAGATCCTGTTTCTTGATGATGACATTGTTGTGCAGAAGGATTTAACTAAATTGTGGTCAGTGGATCTACATGGAAAAGTGAATGGTGCAGTGG AAACCTGTGGTGAAAGTTTTCACCGGTTTGACAAGTACCTTAACTTTTCAAATCCTCATATTGCCAAAAACTTTGATCCAAATGCTTGTGGGTGGGCATA TGGGATGAATATTTTTGATCTTAAGGTGTGGAAAAAGAAGGATATTACAGGAATATACCACAAGTGGCAAAACATGAATGAAGATAGGGTACTATGGAAG CTTGGGACGTTGCCTCCAGGGCTGATTACATTTTATAATTTGACAAATCCTCTTGAGAAGACATGGCATGTGCTCGGATTGGGTTATAATCCAAGCATTG ATAGGTCAGAAATTGAAAGTGCAGCTGTTGTCCACTATAACGGTAACATGAAGCCTTGGCTGGAGTTAGCAATGACTAAATATCGACCATATTGGACCAA GTACATCAAGTATGATCATCCATACCTTCGAAACTGCAACCTAAGCGAGTGA
AA sequence Show only first row Show all	>Potri.002G151400.1 pacid=42777691 polypeptide=Potri.002G151400.1.p locus=Potri.002G151400 ID=Potri.002G151400.1.v4.1 annot-version=v4.1 MALKRGFSISGLNKNRRGGSRLPIVVVIFFCVLSPLIFFVGRGLYTTSSSTDQNLNAVGSGKQHLNWRERLALLHVKSIFSKEVIDVITSSTTDLGPLSL DSFRKNNLSASWKVIGIDSSVEDNAASEPNQTATVVKQEAPKGKEDNISDDDSRSGDTPAKLARRQLREKRREKRAVELLRQDDEAIARLESAAIERSKL VDGAVLGKYSIWRKEMDSENSDSTVRLMRDQMIMARVYLSIAKMKRKLDLLQELQTRIKESQRVLGDSLADSDLHPSVPEKIKAMGQVLSKARELLYDCK LVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTVPNGIHCLSMRLTIDYYLLPLEKRKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSK HVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKANHPTSLSSGSSNLKYRNPKYLSMLNHLRFYLPEVYPK LDKILFLDDDIVVQKDLTKLWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNIFDLKVWKKKDITGIYHKWQNMNEDRVLWK LGTLPPGLITFYNLTNPLEKTWHVLGLGYNPSIDRSEIESAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNLSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	0	1
AT4G24840			unknown protein		Potri.015G094000 [exp]	1.00	0.9665
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	2.44	0.9552
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	3.74	0.9384
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	6.92	0.9341
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	7.21	0.9478	Pt-NPSN11.1
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	7.61	0.9199
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	8.06	0.9475
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	8.77	0.9408
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G128000 [exp]	9.05	0.9251
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	9.79	0.9508

Compare expression of checked genes

Potri.002G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.