Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45640 185 / 3e-61 ATSAP18, HDA19 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074000 [exp] 213 / 2e-72 AT2G45640 163 / 1e-52 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Potri.003G119300 [exp] 194 / 2e-64 AT2G45640 182 / 1e-59 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041388 [exp] 223 / 2e-75 AT2G45640 168 / 5e-54 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Lus10036540 [exp] 216 / 9e-67 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF06487 [poplar] [flax] SAP18 Sin3 associated polypeptide p18 (SAP18)
Representative CDS sequence Show only first row Show all	>Potri.002G151500.1 pacid=42779866 polypeptide=Potri.002G151500.1.p locus=Potri.002G151500 ID=Potri.002G151500.1.v4.1 annot-version=v4.1 ATGGCGGGAATGGCAGAAATGCAGAGGAGACAAGGAGGTAGACCATTTGCTCTTACTGCAAGAGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTATTG ATCGTGAGAAGACATGTCCCCTATTGCTTCGGGTTTTCACTAAGATTGGAGATCATCATAGCAACGAGGATTTTGCAGTGAGAGGCAAGGAGCCGAAAGA TGAGGTTCAAATTTATACGTGGAAGGATGCCACTCTTCGCGAGTTAACTGATCTGGTCAAAGAGGTGACTCCAGCAGCTAGGAGAAGAGATGCAAGACTG TCCTTTGCTTTTGTATATCCTGATAAAAATGGTCGTTTTGTAGTACGAGAGGTGGGCAAGACCAATTCTCATAGAAATGGGAAATTCGATGACAACAAAG CATTGGCTCAGCTTGGCTTCCAGATTGGGGATTACTTGGATGTGGCAATTTTTTAG
AA sequence Show only first row Show all	>Potri.002G151500.1 pacid=42779866 polypeptide=Potri.002G151500.1.p locus=Potri.002G151500 ID=Potri.002G151500.1.v4.1 annot-version=v4.1 MAGMAEMQRRQGGRPFALTARAFPPPPPPPPPIDREKTCPLLLRVFTKIGDHHSNEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVTPAARRRDARL SFAFVYPDKNGRFVVREVGKTNSHRNGKFDDNKALAQLGFQIGDYLDVAIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.002G151500 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Potri.005G044300 [exp]	5.00	0.7822
AT3G12260			LYR family of Fe/S cluster bio...		Potri.001G029900 [exp]	27.22	0.7728
AT1G21930			unknown protein		Potri.002G086300 [exp]	33.64	0.7604
AT5G22280			unknown protein		Potri.006G206100 [exp]	34.98	0.6411
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	36.26	0.7539
AT5G40080			Mitochondrial ribosomal protei...		Potri.005G161600 [exp]	43.95	0.6928
AT1G48440			B-cell receptor-associated 31-...		Potri.012G042700 [exp]	46.15	0.7011
AT2G36300			Integral membrane Yip1 family ...		Potri.004G190800 [exp]	60.73	0.7274
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Potri.001G246600 [exp]	63.63	0.6487	Pt-ATRPC14.1
AT1G69460			emp24/gp25L/p24 family/GOLD fa...		Potri.010G164600 [exp]	63.87	0.6807

Compare expression of checked genes

Potri.002G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.