Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45660 213 / 4e-70 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 201 / 2e-65 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G22950 184 / 2e-58 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 174 / 9e-55 MADS AGL14 AGAMOUS-like 14 (.1) AT5G51860 157 / 2e-48 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 141 / 2e-41 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 139 / 8e-41 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT5G51870 137 / 2e-40 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT3G58780 133 / 2e-38 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 130 / 4e-37 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074200 [exp] 295 / 4e-102 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.001G112400 [exp] 205 / 8e-67 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 198 / 4e-64 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 178 / 3e-56 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.011G075800 [exp] 141 / 2e-41 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G064300 [exp] 140 / 4e-41 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 138 / 2e-40 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.014G074100 [exp] 134 / 6e-39 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.019G077200 [exp] 130 / 8e-38 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006715 [exp] 194 / 4e-62 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 182 / 2e-57 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10031665 [exp] 152 / 6e-47 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10008264 [exp] 144 / 3e-42 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 143 / 4e-42 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10014144 [exp] 135 / 4e-40 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10027404 [exp] 133 / 9e-39 AT5G62165 154 / 3e-47 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10006716 [exp] 130 / 5e-38 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10004638 [exp] 126 / 1e-35 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10036543 [exp] 120 / 2e-35 AT2G45660 120 / 6e-36 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.002G151700.3 pacid=42777430 polypeptide=Potri.002G151700.3.p locus=Potri.002G151700 ID=Potri.002G151700.3.v4.1 annot-version=v4.1 ATGGTGAGAGGAAAGACTCAAATGAGGCGCATAGAGAACGCTACAAGCAGGCAAGTCACCTTCTCTAAGCGGAGAAATGGACTGCTGAAGAAGGCTTTTG AACTATCAGTTCTTTGTGATGCTGAGGTCGCTGTTATCGTCTTCTCTCCTAGAGGGAAGCTCTATGAATTTGGAAGCTCAAGCGTGCAGGAGACAATTGA ACGTTATCAGAGGCATGTGAAAGAAAGCAACACAAACAAGCAGACAAGCGAACTGAACATGGAGCAACTGAAGGGCGAAGCAGCTAGCATGATAAAGAAG ATAGAGATTCTTGAAGTTTCGAAACGAAAGCTACTGGGAGAATGTTTGGGATCGTGCACTGTTGAAGAACTGCAACAAATCGAACAACAGTTAGAGAGGA GTGTAAGCACCATCCGAGCTAGAAAGAATCAGGTTTTCAGAGAACAGATTGAGCAACTAAAACAAAAGGAGAAGCAACTGACAGCTGAAAATGCAAGGCT GTCTAACAAGTCTGGCGTCCAGCCATGGCGAGTACTCTCAAGGGAACAGAGAGAGAATTTACCCTGTGAAGAACAGAGAGATAGCAGTTCAATTTCGGAT GTGGAGACCGAATTGTTCATTGGACTACCAGAAACAAGAACAAGGCGCCTCCCTCTAAGAAACTAG
AA sequence Show only first row Show all	>Potri.002G151700.3 pacid=42777430 polypeptide=Potri.002G151700.3.p locus=Potri.002G151700 ID=Potri.002G151700.3.v4.1 annot-version=v4.1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIVFSPRGKLYEFGSSSVQETIERYQRHVKESNTNKQTSELNMEQLKGEAASMIKK IEILEVSKRKLLGECLGSCTVEELQQIEQQLERSVSTIRARKNQVFREQIEQLKQKEKQLTAENARLSNKSGVQPWRVLSREQRENLPCEEQRDSSSISD VETELFIGLPETRTRRLPLRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.001G146200 [exp]	3.46	0.7448	PtpRR11
AT4G15248	CO		B-box type zinc finger family ...		Potri.017G039400 [exp]	10.24	0.7312
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	10.58	0.7158
AT5G42680			Protein of unknown function, D...		Potri.014G035000 [exp]	11.04	0.7980
AT1G17830			Protein of unknown function (D...		Potri.017G155200 [exp]	15.29	0.7410
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	18.54	0.7629
AT1G28100			unknown protein		Potri.003G163800 [exp]	19.26	0.7548
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G107300 [exp]	26.09	0.7687
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026500 [exp]	30.00	0.7271	Pt-AG12.2
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.009G121200 [exp]	32.46	0.6861

Compare expression of checked genes

Potri.002G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.