Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 717 / 0 calcineurin B subunit-related (.1.2) AT1G80950 130 / 8e-33 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 52 / 9e-07 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT3G51850 50 / 3e-06 CPK13 calcium-dependent protein kinase 13 (.1) AT3G51920 44 / 5e-05 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT2G41110 44 / 6e-05 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 44 / 6e-05 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 44 / 6e-05 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 44 / 6e-05 CAM7 calmodulin 7 (.1) AT5G21274 44 / 6e-05 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074300 [exp] 957 / 0 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 139 / 5e-36 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 126 / 2e-31 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 57 / 1e-08 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.009G102500 [exp] 54 / 5e-08 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.015G066200 [exp] 52 / 7e-07 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.007G042900 [exp] 48 / 4e-06 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.004G183300 [exp] 49 / 5e-06 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G089200 [exp] 44 / 1e-05 AT3G03430 128 / 2e-40 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036544 [exp] 752 / 0 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10015853 [exp] 747 / 0 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 739 / 0 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 682 / 0 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 123 / 2e-30 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 102 / 2e-23 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10001775 [exp] 57 / 2e-09 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10042185 [exp] 58 / 1e-08 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10023947 [exp] 58 / 1e-08 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 56 / 4e-08 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G151800.1 pacid=42778379 polypeptide=Potri.002G151800.1.p locus=Potri.002G151800 ID=Potri.002G151800.1.v4.1 annot-version=v4.1 ATGGCAAACCATGATCTTGAATCCCCTCTCCTCTGCTCACAACTTTCTGATTCTCCACATCTAATCCTCTCCGTTCCTGACTCTGACTTCACCATTCAAC AATCTAATAACAGCCACCACAACCACAACCCTAGCCCTAACCCCAATACTTCTTCTCGCAACCCTTTTGAATTCCTCGGCTCAGATGGACTATCAGTACC CGCACCATCGACCCTGGATCCGTTTAAAAATGATACGCCTTATATTGAGGGATTATATGAATTGATTAAGATTGTGATTTGTTTGCCAATTGCAATTGCA AGATTGGTGCTTTTTGGGGTTTGTTTGGCTATAGGATATGTTGCAACAAAAATTGCATTAGAAGGATGGAAGGACATGCATAATCCTATGCCCAAATGGA GGTCTAGGTTAATGTGGGTCACTAGGGGTTGTGCTCGCTGTATTTTGTTCTCTTTTGGTTATCATTGGATTAAAAGAAAAGGAAAGCTTGCTCCAAGAGA AATTGCACCAATCGTTGTGTCTAATCATGTATCATATATTGATCCAATTTTTTATTTTTTTGAATTCTTCCCTACAATTGTTGCGGCCGAGTCACACGAT TCTATGCCCTTTGTTGGAACTATTATTAGAGCAATGCAGGTGATATATGTAAATAGGTTTTTGCCATCATCAAGGAAGCATGCTGTTAATGAAGTAAAGA GAAAAGCTTCATGTGATAAATTTCCTCGAGTGCTTTTGTTTCCTGAGGGAACGACTACTAACGGAAAGGTTCTTATTTCATTCCAACTTGGAGCATTCAT CCCTGGTTATGCAATTCAACCCATAATTGTCCGCTATCCCCATGTTCACTTTGATCAATCTTGGGGGAATATTTCTTTGGGAATGCTCATGTTTAAAATG TTTACACAGTTTCACAATTTTATGGAGGTAGAATATCTACCAGTTGTTTCACCCCTTGACAATTGCGAAGAAAATCCTGCTCATTTTGCCAAGAGGACTA GCCATGCTATTGCTTCTGCTCTCAATGTTGTTCAAACGTATCACTCTTACGGCGACGTGATGCTTCTCATGAAAGCATCCGAGTCGAAGCAGGAGAAGCC CTCAAGTTATATGGTTGAAATGGCTAAGGTGGAATCATTGTTTCATGTAAGCAGTTTGGAAGCTGTGGACTTTCTCGACAAGTTTCTGTCTATGAATCCA GATGCCAGTGGTCGTGTTAAATTCCGTGACTTTTTGAGGGCTTTGAGAGTGAGGACTTGTACACTTTCAGAAGAGTTATTTGGGTTCCTTGACGTAGAGA AGAAAGGATCAATTACATTCAAGCAGTTTTTGTATGGATCAGCACATGTCTTGAAGCAACCACTATTCCGGCAAGCCTGTGAACTAGCTTTTACTGAATG TGACACCGGAGGACATGGTCTAATTTCAGAGCAAGAATTGGGAGACACAATAAGACTAGCAATCCAAAACTTGGATGAGGATGAGATCCATGAGCTCTTC AATGTATTTGATACCGATGGTGATGGGATTGTTAGCAAGGATAGTTTTATTTCTTGTCTAAGACGGAATCCTTTGCTGATTGCACTTTTTGCACCTTGTT TGGTGCACAAGGACTCATCACAAGGTGGTCACAGGATCCTGGAGATTGTATGA
AA sequence Show only first row Show all	>Potri.002G151800.1 pacid=42778379 polypeptide=Potri.002G151800.1.p locus=Potri.002G151800 ID=Potri.002G151800.1.v4.1 annot-version=v4.1 MANHDLESPLLCSQLSDSPHLILSVPDSDFTIQQSNNSHHNHNPSPNPNTSSRNPFEFLGSDGLSVPAPSTLDPFKNDTPYIEGLYELIKIVICLPIAIA RLVLFGVCLAIGYVATKIALEGWKDMHNPMPKWRSRLMWVTRGCARCILFSFGYHWIKRKGKLAPREIAPIVVSNHVSYIDPIFYFFEFFPTIVAAESHD SMPFVGTIIRAMQVIYVNRFLPSSRKHAVNEVKRKASCDKFPRVLLFPEGTTTNGKVLISFQLGAFIPGYAIQPIIVRYPHVHFDQSWGNISLGMLMFKM FTQFHNFMEVEYLPVVSPLDNCEENPAHFAKRTSHAIASALNVVQTYHSYGDVMLLMKASESKQEKPSSYMVEMAKVESLFHVSSLEAVDFLDKFLSMNP DASGRVKFRDFLRALRVRTCTLSEELFGFLDVEKKGSITFKQFLYGSAHVLKQPLFRQACELAFTECDTGGHGLISEQELGDTIRLAIQNLDEDEIHELF NVFDTDGDGIVSKDSFISCLRRNPLLIALFAPCLVHKDSSQGGHRILEIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45670			calcineurin B subunit-related ...		Potri.002G151800 [exp]	0	1
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Potri.014G163100 [exp]	6.00	0.6165
AT5G20120			unknown protein		Potri.018G066700 [exp]	16.43	0.6563
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	24.24	0.5744
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Potri.011G092200 [exp]	50.79	0.5797	Pt-PPX1.2
AT2G34090		MEE18	maternal effect embryo arrest ...		Potri.011G065000 [exp]	55.31	0.5310
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.017G091000 [exp]	64.40	0.5469
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	69.97	0.5493
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.003G095701 [exp]	70.22	0.5677
AT5G39890			Protein of unknown function (D...		Potri.004G129400 [exp]	76.21	0.5624
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	76.58	0.5274

Compare expression of checked genes

Potri.002G151800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.