Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00230 939 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G03620 641 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 567 / 0 subtilase family protein (.1) AT5G59120 545 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 540 / 0 Subtilase family protein (.1) AT5G58840 531 / 6e-180 Subtilase family protein (.1) AT3G46840 531 / 1e-179 Subtilase family protein (.1) AT5G59090 529 / 1e-178 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59100 526 / 2e-177 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 513 / 6e-173 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074500 [exp] 1014 / 0 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 663 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 656 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 625 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 617 / 0 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 604 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 602 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 570 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 558 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009313 [exp] 1079 / 0 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 624 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 621 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10020582 [exp] 610 / 0 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 606 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 590 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 587 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 576 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10003254 [exp] 558 / 0 AT5G03620 711 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 551 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.002G151900.2 pacid=42778317 polypeptide=Potri.002G151900.2.p locus=Potri.002G151900 ID=Potri.002G151900.2.v4.1 annot-version=v4.1 ATGTCAAGGAAGAAATTGATTATTCCTTCCATTCTTCTTTCAAATGTTCTAATCTTCATCTTGCTAGGTTTTTCTGCTGCAACTGAAGATGAACAGAAGG AATTCTTTATTGTTTATCTTGGAGATCAACCGGTGATCAATAATGTCTCTGCGGTGCAAACACATATTGATGTTCTGTCGTCCATCAAGAGAAGTGATCT AGAAGCTAAGGAGTCCATCATATATAGCTACACAAAGATCTTCAATGCATTTGCTGCAAAGCTATCTAAAGCGGAAGCCAGAAAGCTGTCACTCCTGGAC GAAGTTCTTTCCGTGTTTCCAAATCGGTATCACAAACTCCACACAACCAAATCATGGGATTTTATTGGGCTTCCTAGCACTGCAAAAAGAAACCTGAAAA TGGAGAGGAACATAGTTGTGGGTCTACTGGATACAGGGATCACTCCGCAGTCTGAGAGCTTTAAGGATGATGGTTTTGGCCCTCCACCTAGAAAATGGAG AGGCACTTGCAGTCACTATGCTAATTTCTCAGGATGCAACAACAAGCTTGTAGGGGCTAGATACTTCAAGCTCGACGGCAATCCGGATCCCAGTGACATC TTATCTCCAGTAGATGTGGATGGCCACGGGACACACACATCATCCACACTAGCAGGAAACCTAGTTCCAGATGCCAGCCTATTTGGGCTAGCAAGAGGGG TTGCTCGTGGTGCAGTGCCAGACGCTAGGGTAGCCATGTATAAAGTGTGTTGGGTCAGCTCTGGTTGCTCAGATATGGACCTACTTGCTGCATTTGAAGC TGCTATACATGATGGTGTTGATGTTCTATCAATATCCATTGGTGGAGTGAGCGCTGATTATGTATCAAATGCAATAGCCATAGGTGCATTCCATGCCATG AAGAACGGAATTATCACAGTGGCCTCAGGTGGAAATGATGGACCATCTTCAAGTTCCGTGGCGAACCATGCGCCATGGCTCTTGACCGTTGCAGCTAGTG GCATTGACAGGGAGTTCAGGAGCAAAGTTGAGTTAGGCAATGGGAAGATTGTCTCGGGTATTGGAGTGAACACATTTGAACCAAAACAAAAATTATATCC AATTGTCAGTGGGGCAGATGCTGGTTACTCTAGAAGCGATGAGGGTGCAAGGTTCTGTGCCGATGGCTCGTTGGACCCTAAGAAGGTGAAAGGGAAGCTT GTCTTGTGTGAGTTAGAAGTATGGGGTGCTGACTCTGTTGTTAAAGGAATTGGAGGAAAAGGCACTATTCTTGAGAGTGAGCAATATCTTGATGCAGCCC AGATTTTTATGGCACCAGCAACCGTAGTCAATGCCACCGTCAGCGACAAAGTCAATAATTATATACATTCCACCAAATCTCCATCAGCAGTGATATACAG AACCCAAGAAGTGAAAGTCCCTGCTCCTTTTATCGCTTCCTTTTCGTCTCGGGGTCCAAATCCAGGATCAGAACGCATTCTCAAGCCCGACGTCGCAGCA CCAGGAATTGACATTTTGGCATCATACACTCCCTTGAGGTCGCTCACCGGGCTGAAAGGTGATACACAGCACTCAAGATTTTCTCTTATGTCAGGGACTT CCATGGCTTGCCCTCATGTTGCTGGGGTAGCCGCCTATATAAAGTCATTCCATCCAAATTGGACCGCAGCAGCAATCAAATCCGCCATCCTGACAACAGC AAAACCTATGAGCTCAAGAGTGAACAACGATGCAGAATTTGCCTACGGTGCTGGTCAAGTAAATCCTGATAAAGCTAGAAACCCTGGCTTGGTCTATGAC ATGGATGAGATGTCTTACATTCAGTTCCTATGTCACGAAGGCTATAACAGATCCTCCTTAGCTGTTTTAGTTGGTTCAAAATCCGTAAATTGCTCCTCAT TGCTTCCTGGAATTGGCTATGATGCTCTCAACTATCCGACTATGCAACTTAGTGTAAAAAATAAGCATGAACCGACCGTCGGTGTTTTTATAAGGACAGT TACCAATGTAGGTCCTTCTCCTTCCATCTACAATGCAACCATCCAGGCTCCTAAAGGAGTAGATATCGTGGTAAAACCTATGAGCCTCTCCTTCTCTCGT TCCTCGCAGAAGCGAAGTTTTAAGGTTGTGGTCAAGGCAAAACCGATGCCAAGTTCTCAAATGTTGTCAGGTTCACTCGTATGGAAAAGCAATCAGCACA TTGTGAAGAGCCCCATCGTTATTTTTAAACCACTGGACTAA
AA sequence Show only first row Show all	>Potri.002G151900.2 pacid=42778317 polypeptide=Potri.002G151900.2.p locus=Potri.002G151900 ID=Potri.002G151900.2.v4.1 annot-version=v4.1 MSRKKLIIPSILLSNVLIFILLGFSAATEDEQKEFFIVYLGDQPVINNVSAVQTHIDVLSSIKRSDLEAKESIIYSYTKIFNAFAAKLSKAEARKLSLLD EVLSVFPNRYHKLHTTKSWDFIGLPSTAKRNLKMERNIVVGLLDTGITPQSESFKDDGFGPPPRKWRGTCSHYANFSGCNNKLVGARYFKLDGNPDPSDI LSPVDVDGHGTHTSSTLAGNLVPDASLFGLARGVARGAVPDARVAMYKVCWVSSGCSDMDLLAAFEAAIHDGVDVLSISIGGVSADYVSNAIAIGAFHAM KNGIITVASGGNDGPSSSSVANHAPWLLTVAASGIDREFRSKVELGNGKIVSGIGVNTFEPKQKLYPIVSGADAGYSRSDEGARFCADGSLDPKKVKGKL VLCELEVWGADSVVKGIGGKGTILESEQYLDAAQIFMAPATVVNATVSDKVNNYIHSTKSPSAVIYRTQEVKVPAPFIASFSSRGPNPGSERILKPDVAA PGIDILASYTPLRSLTGLKGDTQHSRFSLMSGTSMACPHVAGVAAYIKSFHPNWTAAAIKSAILTTAKPMSSRVNNDAEFAYGAGQVNPDKARNPGLVYD MDEMSYIQFLCHEGYNRSSLAVLVGSKSVNCSSLLPGIGYDALNYPTMQLSVKNKHEPTVGVFIRTVTNVGPSPSIYNATIQAPKGVDIVVKPMSLSFSR SSQKRSFKVVVKAKPMPSSQMLSGSLVWKSNQHIVKSPIVIFKPLD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	0	1
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	1.41	0.9156
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159801 [exp]	1.73	0.9305
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	2.44	0.9125
					Potri.002G049650 [exp]	3.16	0.8438
AT4G24430			Rhamnogalacturonate lyase fami...		Potri.002G110300 [exp]	3.46	0.8727
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	4.00	0.9054
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	5.00	0.9000
AT5G46940			Plant invertase/pectin methyle...		Potri.014G044100 [exp]	7.00	0.8501
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.011G065500 [exp]	7.14	0.8066
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050700 [exp]	7.41	0.8426

Compare expression of checked genes

Potri.002G151900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.