Plant FIBer expression Database

Potri.002G152025 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G074600
[exp]
110 / 2e-29 AT1G01900 788 / 0.0 subtilase family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G152025.1 pacid=42776863 polypeptide=Potri.002G152025.1.p locus=Potri.002G152025 ID=Potri.002G152025.1.v4.1 annot-version=v4.1
ATGAGATGTTTTTTTTTTTTTTTGACAATTATCACTATAAACCCCCTAAAGAGAGTGATACCACATCAACTCCATCAGCAACAGCTTGGTCTATGGCAGC
CAATAAATCAGTGTTGTTACAACCTGATGGCTAACAAACTTTGTAAGGTGCGATTCTTGCCGTATACTTCATTCCAGCTGCTGAACCATTCGCCAATCCA
TAAAAGCTTGCCTTGTCTACAAGGTTTCCAGCAGCAGTTGCTGCAGTATGTGTTCCATGGCCTTGTGTGTCTCGAGGGGATCGATGATCAATTGTTTAAT
TAA
AA sequence
>Potri.002G152025.1 pacid=42776863 polypeptide=Potri.002G152025.1.p locus=Potri.002G152025 ID=Potri.002G152025.1.v4.1 annot-version=v4.1
MRCFFFFLTIITINPLKRVIPHQLHQQQLGLWQPINQCCYNLMANKLCKVRFLPYTSFQLLNHSPIHKSLPCLQGFQQQLLQYVFHGLVCLEGIDDQLFN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01900 SBTI1.1, ATSBT1... subtilase family protein (.1) Potri.002G152025
[exp]
0 1
AT1G03390 HXXXD-type acyl-transferase fa... Potri.006G158400
[exp]
10.90 0.5318
Potri.012G010900
[exp]
33.46 0.5134
AT2G26450 Plant invertase/pectin methyle... Potri.018G051200
[exp]
33.74 0.5114
AT4G22820 A20/AN1-like zinc finger famil... Potri.015G131900
[exp]
36.66 0.4438
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.008G077700
[exp]
51.53 0.4865 Pt-PNFT3.4
AT5G64080 AtXYP1 xylogen protein 1, Bifunctiona... Potri.005G169000
[exp]
56.16 0.4814
AT3G60460 MYB DUO1 DUO POLLEN 1, myb-like HTH tra... Potri.014G054700
[exp]
72.82 0.4422
AT3G05610 Plant invertase/pectin methyle... Potri.005G022900
[exp]
95.81 0.4426 PEF1.2
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.007G138400
[exp]
96.97 0.4442
AT4G38140 RING/U-box superfamily protein... Potri.004G209600
[exp]
107.77 0.4596

Potri.002G152025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.