Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLDBETA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 1438 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 1318 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 1189 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 1173 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 1143 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 861 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 685 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 675 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 625 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 488 / 2e-157 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074700 [exp] 1790 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 1230 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 939 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 902 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 899 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 857 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 844 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G193000 [exp] 682 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 672 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006819 [exp] 1409 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 1399 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 1189 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 1185 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 1085 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 926 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 925 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10042282 [exp] 892 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 869 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 818 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G152100.1 pacid=42777699 polypeptide=Potri.002G152100.1.p locus=Potri.002G152100 ID=Potri.002G152100.1.v4.1 annot-version=v4.1 ATGGATAATGATCATGGCTCTCCATACCCTTATAACAATCCATATCCATACCCTCACCATCCTCCTCCTCCTCCTCCAAATTATGGGTGTCCACCTTCAG ATCCATGCTATCCTCCTCATCCCTATCCTCCATACCCTCCATACGGTGCTTACGCATATCCACCACCACCACACTCACCATCGCATTCAGGGCCTTTAGA TTATTCTCACCAAAATCCTTCAGCACCATATCTAACAAGCCATTCAGGGCCTTTAGACTATTCACACAATCCTTCAAAACCACAACCAACTAGTCTTTCG GGTTCTTTAGACTATTCTCAACACCAACCACCATCACCACATCCAATAACGAATTCGGGACCTTTAGATTTTAATCGCCACTATTCTGGTCCTTTAGCAA CATCACCATATGCTGCATATCCACCAGTACCTCATGTTTCAAATTCAATCCTTCATAATTACCCTTTTGCTCAACCTCAGTCGAGCCAATATCCTTCTAT TGATAGCATTTCACAATCGCCCTCTAGGGCTAATAGCTTTTCCGGTATTCATAGACAAGATAGTTCTTCATCTTTAGGAATTGGATCATCTTCATCAAAT CCCGATAAAGTTGATGCTGCTGTTGCTGGTACTTCTTCTGCATATCCACCTTTGGATGATTTAATAAGTAATTTGCATTTGAATGATACGAATAATCATC CTACTGCCCCTGCTTCCCTACCAGCTCCTCCAGTACCTTCAGTGCCTTATTCCCCTCAAAGCTATCAGGGCTCTAGTTTTGGACATGCCCCCCCACACGA ATTATATGGTTATCCTAATGACTCATTTTCAATTAATTGGGAGGAGAATTATGCGGGCAAAGTTGATTCGTCTGGTCACTATCCTGCTTCTCCTTATGCG CATTCATCCTCCTTTAATGGATCACAGCATGGCCAAAGTATGGAGGTTGTGCCAGTGTCGAGTGGTAAAGGGTCGTCTTTGAAGGTTTTGCTCTTACACG GGAATTTGGATATTTGTGTTTATGATGCAAAGAATCTCCCAAACATGGACATTTTCCACAAGACTTTGGGTGATATGTTCAACAAATTACCTGGAAGTAT AAGTAGCAAGATTGAAGGACAAGTGTACACCAAGATTACCAGCGACCCTTATGTTTCAATTTCAGTAGCTGGTGCTGTGATTGGGAGGACTTTTGTGATT AGCAATAGTGAAAATCCTGAATGGACGCAGCATTTTTATGTTCCTGTTGCACATTCCGCTGCAGAAGTGCGTTTTGTTGTTAAAGACAGTGATGTTCTGG GGTCGCAGTTGATAGGAGTTGTGGCACTTCCAGTTGAACAGATATATTCAGGGGCAAGAATTGAGGGAGTTTACCCTATTTTGAATAACAACGGAAAACA ATGTAAGCCTGGTGCTTCTTTGAGAATTTCAATTCAGTACATGCCCATAGAGAAACTGGGCATTTATCAACATGGTGTTGGTGCTGGTCCTGATTATCAT GGTGTGCCTGGTACCTATTTTCCTCTTAGGAAAGGTGGAACAGTTACTCTTTATCAAGATGCCCATGTTCCTGACGGGAGCCTTCCAAATGTGCAACTTG ATAACGGGATGCCTTATCTGCATGGAAAGTGCTGGCAAGATATCTTTGATGCTATACGTCAAGCCCGGCGTTTAATTTACATTACCGGGTGGTCTGTATG GCACAAAGTTGCTCTGGTCCGGGATGGTGGTCAGCATTCAGGTGTGCCCCTTGGGGATCTTCTGAGGTCCAAGTCCCAGGAAGGCGTAAGAGTTCTGCTT CTTCTTTGGGATGATCCTACTTCAAGGAATGTCTTGGGATATAAAACAGATGGAATTATGGCAACCCATGATGAGGAAACTCGCCGCTTTTTCAAACGCT CATCAGTTCAAGTGCTGCTTTGTCCTCGCATTGCTGGGAAAAAACATAGCTGGGTCAAGCAAAGGGAGGTCGGAACAATTTATACACATCATCAGAAAAC TGTAATTGTTGATGCTGATGCTGGCAATAATAGAAGAAAAATCATAGCCTTTGTTGGTGGACTTGATTTATGTGATGGTCGATATGATAATCCTGATCAC TCTCTATTTAGGACACTACAAACTGTTCACAAAGATGACTATCACAACCCTACTTTCACTGGTAGTGTCGCAAATTGCCAAAGAGAACCATGGCATGACT TGCACAGCAGAATAGATGGTCCAGCAGCGTATGATGTTCTAACTAACTTTGAGGACCGTTGGATGAAGGCTGCAAAACCTAAGGGCCTTAGAAAACTAAA AACATCATATGATGATGCTTTACTCAGGATTGACAGAATTCCAGACATTATAGGTGTTTTTGATGCTCTTTCCATTAGTGAGGATGACCCTGAAGCTTGG CATGTTCAGATTTTTCGTTCAATTGATTCAAACTCTGTGAAAGACTTCCCAAAGGATCCGAAGGATGCCCCGAAAAAGAACCTGGTGTGTGGAAAGAATG TGCTCATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCTGCCCAACATTTTATTTACATAGAGAACCAGTATTTTATTGGGTCCTCGTA CAACTGGGGTTCATATAAAGATTTAGGGGCTAATAATTTGATTCCTATGGAAATTGCACTAAAGATTGCCAATAAAATCAGAGCGAATGAGAGATTTGCT GCCTACATTATTGTTCCGATGTGGCCAGAGGGTGTTCCAACCGGTGCTGCCACGCAAAGGATTTTGTTTTGGCAGCATAAAACTATGCAAATGATGTATG AGACAATTTACAAGGCCCTAGACGAGGTTGGACTTGAGGATGCATTCTCATCACAGGATTTTTTGAACTTCTTCTGTCTTGGTAATCGTGAAGCTGTAGA TGAATCCAACTCTTCAGGGATGCCAACTCCTTCAAGTTCTCCCATTCCTCAGGCACTTTGTCAGAAAAGCCGGCGGTTCATGATTTATGTTCATTCGAAA GGGATGATAGTTGATGATGAGTATGTAATACTAGGATCTGCAAACATAAATCAGCGTTCAATGGAGGGCACTAGAGACACTGAGATTGCAATGGGAGCCT ACCAACCTCAACATACCTGGGCAAGAAAACAATCTAATCCGCTTGGACAGATCCATGGATATCGGATGTCTCTCTGGGCAGAGCATACTGGAGTTATTGA GGACTCCTTTACAAAACCTGAGAGTCTTGAATGTGTTAGGAGAATTAGAACAATGGGGGAGATGAACTGGAAACAATTTGCTGCTGAGGAGGTTTCAGAG ATGAGAGGGCACCTGCTAAAGTACCCGGTTGAAGTTGATCGAAAGGGCAAGGTGAGGCCTATCCCTGGATCTGAAACTTTCCCAGATGTCGGAGGAAATA TAACGGGTTCGTTTCTTGCAATTCAGGAGAATCTGACTATCTAA
AA sequence Show only first row Show all	>Potri.002G152100.1 pacid=42777699 polypeptide=Potri.002G152100.1.p locus=Potri.002G152100 ID=Potri.002G152100.1.v4.1 annot-version=v4.1 MDNDHGSPYPYNNPYPYPHHPPPPPPNYGCPPSDPCYPPHPYPPYPPYGAYAYPPPPHSPSHSGPLDYSHQNPSAPYLTSHSGPLDYSHNPSKPQPTSLS GSLDYSQHQPPSPHPITNSGPLDFNRHYSGPLATSPYAAYPPVPHVSNSILHNYPFAQPQSSQYPSIDSISQSPSRANSFSGIHRQDSSSSLGIGSSSSN PDKVDAAVAGTSSAYPPLDDLISNLHLNDTNNHPTAPASLPAPPVPSVPYSPQSYQGSSFGHAPPHELYGYPNDSFSINWEENYAGKVDSSGHYPASPYA HSSSFNGSQHGQSMEVVPVSSGKGSSLKVLLLHGNLDICVYDAKNLPNMDIFHKTLGDMFNKLPGSISSKIEGQVYTKITSDPYVSISVAGAVIGRTFVI SNSENPEWTQHFYVPVAHSAAEVRFVVKDSDVLGSQLIGVVALPVEQIYSGARIEGVYPILNNNGKQCKPGASLRISIQYMPIEKLGIYQHGVGAGPDYH GVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVQLDNGMPYLHGKCWQDIFDAIRQARRLIYITGWSVWHKVALVRDGGQHSGVPLGDLLRSKSQEGVRVLL LLWDDPTSRNVLGYKTDGIMATHDEETRRFFKRSSVQVLLCPRIAGKKHSWVKQREVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPDH SLFRTLQTVHKDDYHNPTFTGSVANCQREPWHDLHSRIDGPAAYDVLTNFEDRWMKAAKPKGLRKLKTSYDDALLRIDRIPDIIGVFDALSISEDDPEAW HVQIFRSIDSNSVKDFPKDPKDAPKKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWGSYKDLGANNLIPMEIALKIANKIRANERFA AYIIVPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALDEVGLEDAFSSQDFLNFFCLGNREAVDESNSSGMPTPSSSPIPQALCQKSRRFMIYVHSK GMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPQHTWARKQSNPLGQIHGYRMSLWAEHTGVIEDSFTKPESLECVRRIRTMGEMNWKQFAAEEVSE MRGHLLKYPVEVDRKGKVRPIPGSETFPDVGGNITGSFLAIQENLTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.002G152100 [exp]	0	1	PLDBETA1.1
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.001G453200 [exp]	1.00	0.8934
					Potri.001G298266 [exp]	5.09	0.8559
AT3G21650			Protein phosphatase 2A regulat...		Potri.014G157000 [exp]	5.83	0.8140
AT4G28260			unknown protein		Potri.013G133200 [exp]	6.70	0.8310
					Potri.001G298233 [exp]	7.34	0.8499
					Potri.003G027318 [exp]	7.48	0.8488
					Potri.003G027116 [exp]	8.06	0.8470
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	8.83	0.8445
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	10.39	0.8252
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	16.73	0.8371

Compare expression of checked genes

Potri.002G152100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.