Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01910 591 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT3G10350 132 / 5e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60730 125 / 1e-32 Anion-transporting ATPase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078100 [exp] 652 / 0 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.010G225100 [exp] 136 / 2e-36 AT3G10350 599 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G037100 [exp] 135 / 5e-36 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041377 [exp] 577 / 0 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036552 [exp] 577 / 0 AT1G01910 576 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10037982 [exp] 130 / 5e-34 AT3G10350 620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038715 [exp] 129 / 7e-34 AT3G10350 622 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021449 [exp] 105 / 2e-25 AT3G10350 434 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G152500.1 pacid=42778041 polypeptide=Potri.002G152500.1.p locus=Potri.002G152500 ID=Potri.002G152500.1.v4.1 annot-version=v4.1 ATGGCAACAACAGATATACCAGATGGAACGGTAAGGAACATACTAGACCAAGACACTCTCAAGTGGGTTTTTGTTGGAGGCAAAGGTGGTGTAGGCAAAA CGACTTGCAGTTCGATTCTCTCAATTCTTCTGGCTCAAGTCAGATCTTCCGTTTTAATCATATCTACTGATCCAGCTCATAACCTTAGTGACGCGTTTCA ACAACGATTTACGAAGACTCCTACTTTGGTTAATGGGTTCGGCAATTTATATGCTATGGAGGTGGATCCTAACGTTGAAAACGATGATATTGGAGGAAGC GAAGGAATGGATAGTTTGTTTTCTGAGCTTGCGAATGCAATTCCTGGCATTGATGAGGCCATGAGTTTCGCGGAGATGTTGAAACTGGTGCAAACGATGG ATTATTCCTGTATTGTATTTGATACTGCTCCAACTGGTCATACACTCCGGCTATTACAATTTCCATCAACTTTGGAGAAGGGGCTTCAGAAGGTGATGTC TTTGAAAAGTAAATTTGGCGGCTTAATTGGTCAGATGACTCGTCTCTTTGGCATCGATGATGAGTTTGGCGAGGATGCAATCTTGGGAAGGCTTGAAGGC ATGAAAGATGTGATCGAACAAGTCAATAAGCAATTCAAAGACCCAGACTTGACAACCTTTGTTTGTGTTTGCATTCCCGAGTTCCTATCCCTTTATGAAA CTGAGAGACTGGTTCAGGAGCTTACCAAGTTTGAGATTGACACGCATAATATTATCATTAATCAAGTCCTTTATGATGAAGAAGATGTTGAATCCAAATT ACTCAAAGCGAGAATGCGGATGCAACAGAAGTACCTTGATCAGTTCTATATGTTGTATGATGATTTCAACATTACAAAACTTCCATTGTTGCCACAAGAG GTTACTGGAGTTGAAGCTCTCAGAGCTTTATCAAGTCACTTTACATCACCATATCAACCTTCCACCAGCAGAAGTGCTGTGGAAGATTTAGAACGAAGGA TATCTACCCTAAAGCTGCAGTTGGAACATGCTGAAGCAGAACTAGACAGACTTCAAAAAGGAAAGCAAAAGGTCTAA
AA sequence Show only first row Show all	>Potri.002G152500.1 pacid=42778041 polypeptide=Potri.002G152500.1.p locus=Potri.002G152500 ID=Potri.002G152500.1.v4.1 annot-version=v4.1 MATTDIPDGTVRNILDQDTLKWVFVGGKGGVGKTTCSSILSILLAQVRSSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFGNLYAMEVDPNVENDDIGGS EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLQKVMSLKSKFGGLIGQMTRLFGIDDEFGEDAILGRLEG MKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDEEDVESKLLKARMRMQQKYLDQFYMLYDDFNITKLPLLPQE VTGVEALRALSSHFTSPYQPSTSRSAVEDLERRISTLKLQLEHAEAELDRLQKGKQKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01910			P-loop containing nucleoside t...		Potri.002G152500 [exp]	0	1
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	4.58	0.8114
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.018G039200 [exp]	5.19	0.8568
AT5G27200		ACP5	acyl carrier protein 5 (.1)		Potri.005G044800 [exp]	12.64	0.8065	Pt-ACP1.1
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	13.67	0.7945
AT1G67350			unknown protein		Potri.003G173000 [exp]	14.42	0.8178
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	15.00	0.7970
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	15.42	0.8254
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.014G053000 [exp]	16.12	0.8011	Pt-PPFRU36.1
AT5G07960			unknown protein		Potri.015G056300 [exp]	18.84	0.8171
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	19.36	0.8254

Compare expression of checked genes

Potri.002G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.