Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62150 100 / 7e-29 peptidoglycan-binding LysM domain-containing protein (.1) AT3G52790 97 / 4e-27 peptidoglycan-binding LysM domain-containing protein (.1) AT4G25433 97 / 4e-27 peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077900 [exp] 179 / 2e-59 AT4G25433 108 / 7e-32 peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G137500 [exp] 134 / 7e-42 AT4G25433 113 / 7e-34 peptidoglycan-binding LysM domain-containing protein (.1) Potri.012G135100 [exp] 129 / 9e-40 AT4G25433 108 / 5e-32 peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G030200 [exp] 100 / 1e-28 AT3G52790 114 / 1e-34 peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G231000 [exp] 98 / 2e-27 AT3G52790 119 / 3e-36 peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027407 [exp] 115 / 4e-34 AT3G52790 115 / 2e-34 peptidoglycan-binding LysM domain-containing protein (.1) Lus10031662 [exp] 114 / 1e-33 AT3G52790 112 / 4e-33 peptidoglycan-binding LysM domain-containing protein (.1) Lus10015011 [exp] 99 / 2e-28 AT5G62150 107 / 5e-32 peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.002G152600.1 pacid=42778109 polypeptide=Potri.002G152600.1.p locus=Potri.002G152600 ID=Potri.002G152600.1.v4.1 annot-version=v4.1 ATGGCTTTCATAGTCTCAAACAAGCCTATGTTTACATTGATGTCCGTAGCTGATGCAGCTACATGGTACTGTGCCCTTGTACTTCTTGCTCTAATATTGC TTGCTTCTTTAAGAGAGGCATCTCCCACATACGATGATGATCGTCACCATGATGTTGTCGTTGAAGGCAATCAAATACTTTACCGGCCGTGCGATGAAAT TTATGTTGTGAAAGAAGGAGAAACCCTTCACACCATCAGTGATAAGTGCGATGACCCTTTTATAGTGGAGGAGAATCCTCATATTCATGATCCTGATGAT GTTTTTCCTGGTCTTGTTATCAAGATTACTCCTTCAAGGTCTAGGAAATTATTGCGGTAG
AA sequence Show only first row Show all	>Potri.002G152600.1 pacid=42778109 polypeptide=Potri.002G152600.1.p locus=Potri.002G152600 ID=Potri.002G152600.1.v4.1 annot-version=v4.1 MAFIVSNKPMFTLMSVADAATWYCALVLLALILLASLREASPTYDDDRHHDVVVEGNQILYRPCDEIYVVKEGETLHTISDKCDDPFIVEENPHIHDPDD VFPGLVIKITPSRSRKLLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62150			peptidoglycan-binding LysM dom...		Potri.002G152600 [exp]	0	1
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.002G105900 [exp]	2.23	0.8784
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	8.66	0.8236
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	10.29	0.8537
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	18.00	0.7403
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	19.69	0.8417
AT1G12880		ATNUDT12	nudix hydrolase homolog 12 (.1...		Potri.003G161100 [exp]	24.79	0.7876
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	25.69	0.7797
AT4G37290			unknown protein		Potri.007G049500 [exp]	27.05	0.8096
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	29.25	0.8024
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	34.29	0.8094

Compare expression of checked genes

Potri.002G152600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.