Plant FIBer expression Database

Potri.002G152801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2)
AT3G48900 54 / 9e-08 single-stranded DNA endonuclease family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G077300
[exp]
314 / 5e-102 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
Potri.015G142800
[exp]
52 / 5e-07 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
Potri.017G070500
[exp]
46 / 4e-05 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036554
[exp]
252 / 2e-78 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2)
Lus10041375
[exp]
249 / 4e-77 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2)
Lus10005744
[exp]
58 / 8e-09 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
Lus10027451
[exp]
57 / 9e-09 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0464 5_3_exonuc_C PF00867 XPG_I XPG I-region
Representative CDS sequence
>Potri.002G152801.1 pacid=42777990 polypeptide=Potri.002G152801.1.p locus=Potri.002G152801 ID=Potri.002G152801.1.v4.1 annot-version=v4.1
ATGGTTGTTGGTGGCAAATTATGGGATTTACTAGAACACTATGCGCGCCATGATGGACCCGATTTCTTGAGAGAAAAAGGATCACAATTGTCTCCTGTTT
TTGTTGTTGACGAGACTCCGTTGCCAATGAAGTCTCACGCGAGAATAGCAAGGTTTTTTCTGTTTTCGGGGGTTGATATTCCGGGTTTGCTGGTGGCTGA
AAAGGCCAATGGTGAAGCTGAAGCACTGTGTGCTCAGTTAAATGCCAAAGGCCATGTGGATGCTTGTATAACAGCTGATAGTGATGCTTTCCTTTTTGGG
GCTAAGTTTAGGAAACACTTGATAGCTATCTCTCTCTTGGTTGGAAATGATCATGATCTAAATGGCGTGCAAGGGGTTGGGCTTGAGAAGGCTTGTTGTT
TTCGCGATCCAACTTGTTCTCTATGCAGGTTACGTGAAATTGGCAATGGGAACACTCTATTTCAAATTGGCTCAAAAGTTGTAGATGATTTAATGCTTGA
TCTAGATGAGAGCCTAGTAAAGTCAAAAACTTCTCATTGTTCCTTCTGTGGGCATCCAAACAGCAAAAGAGCACATTTCAAGGTTTGCTTAAGAAAGCCA
GAGGGTTCTAAGTGTAATTGTTCCTCCTGTAATGAGGATCGAAAAGAAAAGGAGCGGCAAAACCATGAAAATTGGCGCATAAAAAACATTTCAGAAAGCC
CCTTTTTTTTCCCTTGGGATCAAGGGCTGTGCGAATGGTCTGATGATGGCTCATGCTTATTGCTCGTGAGGTACCCAGGCATTGAGATGCTAATTGATTT
CTTGGATTTTCATCAGCACTGGGAACCATCTTATATTCATATTGATGATGGGTATTGCTTCCTGTTGACAGATGAAAATATGGAGCTTGCTTGTGCTTTT
TCAGAAGAAGTTGAAAGAACGGAGAGCTTCATAAAGAAGAAAGGGTTCAGCTTAAGAGCTGAAGGGTCCGATGAAAAGTCGGAATCAACAAAGTCAAAAC
ATGTCCAACTTAGTACAACAGAATTTTATCATTCTGCTAAGGATGGGACATCAAAACAGAAGAGAAAGGTTTCAAGTTCAAACCTTCCAAAGTCTATGAG
ACGTAGCCTTTTGTTTAAGTAG
AA sequence
>Potri.002G152801.1 pacid=42777990 polypeptide=Potri.002G152801.1.p locus=Potri.002G152801 ID=Potri.002G152801.1.v4.1 annot-version=v4.1
MVVGGKLWDLLEHYARHDGPDFLREKGSQLSPVFVVDETPLPMKSHARIARFFLFSGVDIPGLLVAEKANGEAEALCAQLNAKGHVDACITADSDAFLFG
AKFRKHLIAISLLVGNDHDLNGVQGVGLEKACCFRDPTCSLCRLREIGNGNTLFQIGSKVVDDLMLDLDESLVKSKTSHCSFCGHPNSKRAHFKVCLRKP
EGSKCNCSSCNEDRKEKERQNHENWRIKNISESPFFFPWDQGLCEWSDDGSCLLLVRYPGIEMLIDFLDFHQHWEPSYIHIDDGYCFLLTDENMELACAF
SEEVERTESFIKKKGFSLRAEGSDEKSESTKSKHVQLSTTEFYHSAKDGTSKQKRKVSSSNLPKSMRRSLLFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01880 5'-3' exonuclease family prote... Potri.002G152801
[exp]
0 1
AT2G47430 CKI1 CYTOKININ-INDEPENDENT 1, Signa... Potri.014G121500
[exp]
6.92 0.8101 CKI1.5
AT3G57600 AP2_ERF DREB2F Integrase-type DNA-binding sup... Potri.006G054500
[exp]
8.48 0.7647 Pt-DREB2.1
Potri.003G175432
[exp]
10.67 0.8145
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Potri.010G122200
[exp]
20.49 0.7699
AT2G23740 C2H2ZnF AtCZS nucleic acid binding;sequence-... Potri.005G129800
[exp]
21.67 0.7932
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.006G164000
[exp]
28.28 0.7608
AT1G19250 FMO1 flavin-dependent monooxygenase... Potri.009G143500
[exp]
32.49 0.7525
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Potri.003G107700
[exp]
33.22 0.7531
AT2G41550 Rho termination factor (.1) Potri.006G046700
[exp]
33.94 0.7086
AT5G20420 CHR42 chromatin remodeling 42 (.1) Potri.010G183766
[exp]
35.77 0.7745

Potri.002G152801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.