Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61080 499 / 2e-179 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041374 [exp] 541 / 0 AT3G61080 523 / 0.0 Protein kinase superfamily protein (.1) Lus10036555 [exp] 451 / 4e-161 AT3G61080 457 / 6e-164 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03881 [poplar] [flax] Fructosamin_kin Fructosamine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G153100.1 pacid=42777183 polypeptide=Potri.002G153100.1.p locus=Potri.002G153100 ID=Potri.002G153100.1.v4.1 annot-version=v4.1 ATGGTGGCGTCATACATTGGTATTTCATCTCTCAATTCTTCTTGTTTTCCTCCTCGACCTTGCTTTGCTAAACGCAAACTATTTGCAGTTTCAGCTGCAA TGAGCGATGATCCAATCAGTGATTGGATTATGTCAGAAGGAAATGCAACCCAGATAACACGAACTAGTCCCATTGGTGGTGGTTGTATCAACAATGCAAG GCGTTATGACACTGATGCTGGTTCTTTCTTTGTAAAAACAAACAGGGGTATTGGACCATCCATGTTTGAGGGAGAGGCTCTTGGCCTGGGTGCTATGTAT GAAACCAGAACAATCAGGGTACCTAGGCCATTTAAGGTTGGACCCCTACCAACAGGTGGATCATACATCATTATGGAGTTTATCGAATTTGGGGCATCTA GAGGCAATCAGTCTGTTCTAGGGAGAAAGCTTGCTGAAATGCATAAAGCTGGGAAATCTGAAAAAGGCTTTGGTTTCGATGTTGATAATACCATTGGCAG TACTCCACAGATAAACACTTGGACATCAGACTGGATAGAGTTTTACGGAAAGCACAGATTGGGTTACCAACTTAAGTTGGCATTAGATCAATATGGTGAT TCAACCATTTATCAAAAAGGAAAAAGATTGGTGAAGAACATGGCACCTCTCTTTCAAAACATTGTCATAGAGCCATGCTTACTTCATGGAGACTTGTGGA GTGGGAATATTAGCTCTGACAAGAATGGCGAGCCTGTTATACTAGACCCAGCATGCTATTATGGACACAATGAAGCAGAATTTGGAATGTCATGGTGTGC TGGTTTTGGAGGATCATTTTACAATGCTTATTTTGAGGTGATGCCCAAACAACCAGGCTTTGAGAAGAGGAGAGAGATCTATTTGCTGTATCACTACCTG AATCATTACAATCTCTTTGGTTCCAGTTATCGGTCATCAGCAATGTCAATAATAGATGATTATCTGCTGATGCTAGGAGTGTAA
AA sequence Show only first row Show all	>Potri.002G153100.1 pacid=42777183 polypeptide=Potri.002G153100.1.p locus=Potri.002G153100 ID=Potri.002G153100.1.v4.1 annot-version=v4.1 MVASYIGISSLNSSCFPPRPCFAKRKLFAVSAAMSDDPISDWIMSEGNATQITRTSPIGGGCINNARRYDTDAGSFFVKTNRGIGPSMFEGEALGLGAMY ETRTIRVPRPFKVGPLPTGGSYIIMEFIEFGASRGNQSVLGRKLAEMHKAGKSEKGFGFDVDNTIGSTPQINTWTSDWIEFYGKHRLGYQLKLALDQYGD STIYQKGKRLVKNMAPLFQNIVIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNAYFEVMPKQPGFEKRREIYLLYHYL NHYNLFGSSYRSSAMSIIDDYLLMLGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61080			Protein kinase superfamily pro...		Potri.002G153100 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	1.73	0.9848
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.015G088500 [exp]	3.16	0.9826
AT2G36145			unknown protein		Potri.006G210000 [exp]	3.87	0.9816
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.013G112900 [exp]	6.48	0.9775
AT1G64510			Translation elongation factor...		Potri.001G088300 [exp]	6.63	0.9812
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	7.07	0.9711
AT1G74730			Protein of unknown function (D...		Potri.015G065100 [exp]	7.34	0.9753
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.004G045700 [exp]	7.74	0.9793
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Potri.005G172600 [exp]	11.22	0.9763
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	12.32	0.9763	PSAD1.2

Compare expression of checked genes

Potri.002G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.