Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20030 84 / 4e-19 RING/U-box superfamily protein (.1) AT4G10150 81 / 1e-18 RING/U-box superfamily protein (.1) AT4G33565 82 / 2e-18 RING/U-box superfamily protein (.1) AT4G10160 81 / 2e-18 RING/U-box superfamily protein (.1) AT3G62690 80 / 3e-18 ATL5 AtL5 (.1) AT1G04360 81 / 8e-18 RING/U-box superfamily protein (.1) AT5G43420 79 / 2e-17 RING/U-box superfamily protein (.1) AT4G17905 79 / 2e-17 ATL4H RING/U-box superfamily protein (.1) AT2G46160 77 / 2e-17 RING/U-box superfamily protein (.1) AT1G20823 77 / 2e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076800 [exp] 360 / 1e-128 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.010G235200 [exp] 164 / 1e-50 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 162 / 3e-50 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 84 / 2e-20 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 85 / 6e-20 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 83 / 1e-18 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 82 / 1e-18 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 81 / 4e-18 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 78 / 4e-18 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043426 [exp] 145 / 2e-43 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 145 / 2e-43 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10013618 [exp] 82 / 2e-18 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10009511 [exp] 81 / 9e-18 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10041079 [exp] 77 / 3e-17 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10034953 [exp] 79 / 4e-17 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 79 / 4e-17 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10016163 [exp] 77 / 4e-17 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10006493 [exp] 77 / 6e-17 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10012745 [exp] 77 / 8e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G153400.1 pacid=42778227 polypeptide=Potri.002G153400.1.p locus=Potri.002G153400 ID=Potri.002G153400.1.v4.1 annot-version=v4.1 ATGTTTGGTGCAACTATGAATTTAATCACAACAGCTATTGGTTTTGGTATGAGTGCTACTTTTATTGTGTTTGTTTGTGCAAGAATTATATGTGGGAGGA TAAGAGGTACTGAGTCCAGGCAAATGTTTGAAATTGAGTCCAGAATTGATCCTGAACAGCCAGAGCATCGTATTGGTGGTCTTGAACCAGTTCTGCTTGC TGCAATCCCCACTCTACGGTTCACCCATGAGGAATTCAGTTCTGCAGAAGATGCACAGTGCTCCATATGTTTAGGGGAATACCAAGAAAAGGAAGTATTA AGAATCATGCCCGGATGCGGCCACAACTTCCATCTCTCTTGCATTGATGTATGGCTAAGAAAACAGTCTACATGCCCAGTCTGTCGGTTCCCAATACAAG ATTCTTTTGAAGCAAAGCACATGAGACAGACAGCAATCAGTATGGTCCAATCAATTGATAGTCCTGATACTCGAAGTGAACAATCTCGGCAATGGCTGCT GCCCAGCTATCAGGGTTCAGCGGGGAACCACAGTAATCAAAGGCATCTTGACCCTGTTCCTGGAAACCCTGAAATTACTCCTGGAGAATCACAAACAAGC CGTTCATGA
AA sequence Show only first row Show all	>Potri.002G153400.1 pacid=42778227 polypeptide=Potri.002G153400.1.p locus=Potri.002G153400 ID=Potri.002G153400.1.v4.1 annot-version=v4.1 MFGATMNLITTAIGFGMSATFIVFVCARIICGRIRGTESRQMFEIESRIDPEQPEHRIGGLEPVLLAAIPTLRFTHEEFSSAEDAQCSICLGEYQEKEVL RIMPGCGHNFHLSCIDVWLRKQSTCPVCRFPIQDSFEAKHMRQTAISMVQSIDSPDTRSEQSRQWLLPSYQGSAGNHSNQRHLDPVPGNPEITPGESQTS RS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	0	1
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	5.38	0.8017
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	7.93	0.7909
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	8.12	0.7529
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	9.16	0.7948
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	10.09	0.7889
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	10.77	0.7909
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	12.24	0.7904
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	12.24	0.7437	SDG913,EMB173.1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	16.88	0.7346
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	19.18	0.7772

Compare expression of checked genes

Potri.002G153400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.