Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25500 264 / 1e-87 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 258 / 2e-85 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G61860 245 / 2e-81 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 228 / 7e-75 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G02840 60 / 2e-10 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 58 / 4e-10 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G53500 59 / 6e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT1G09140 58 / 7e-10 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT2G43410 59 / 1e-09 FPA RNA binding (.1.2.3.4) AT2G37340 57 / 1e-09 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076600 [exp] 359 / 1e-126 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.015G135800 [exp] 294 / 6e-99 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 291 / 4e-98 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G175000 [exp] 231 / 3e-76 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G101800 [exp] 229 / 2e-75 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G205025 [exp] 62 / 3e-11 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.008G172100 [exp] 60 / 2e-10 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G129900 [exp] 60 / 2e-10 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.006G215200 [exp] 58 / 1e-09 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015005 [exp] 275 / 6e-87 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10030226 [exp] 221 / 5e-72 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005986 [exp] 219 / 2e-71 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038883 [exp] 174 / 9e-53 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10015564 [exp] 63 / 2e-11 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 63 / 2e-11 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10007869 [exp] 62 / 3e-11 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 62 / 4e-11 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 62 / 6e-11 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10019359 [exp] 62 / 6e-11 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G153600.2 pacid=42780069 polypeptide=Potri.002G153600.2.p locus=Potri.002G153600 ID=Potri.002G153600.2.v4.1 annot-version=v4.1 ATGAAGGCTATATTTTGCGGCAATCTTGATTACGACGCGCGCCAGTCTGATGTCGAGCGTCTTTTTAGAAGATATGGGAGGATTGATAGGGTGGATATGA AGTCTGGATTTGCTTTTGTCTATATGGAGGATGAAAGAGATGCCGAGGATGCCATCCGTAGGCTTGACCAAACAGAATTTGGGAGAAAAGGACGTCGTCT ACGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAAGCCTGCTGGTTCAAGAAGATCATCAGCTAATATGACTCCATCAAAAACTTTGTTTGTCATTAAT TTTGATCCAATTCATACCCGAACTAGGGATCTGGAGAGGCACTTTGATCCTTATGGAAAAATATTGAGCACAAGGATTAGGAGGAATTTTGCATTCGTTC AGTATGAGTTACAGGAAGATGCTACTAAGGCATTGGAAGCAACTAATATGAGCAAGTTGATGGACCGGGTCATTTCAGTGGAATATGCTGCTCGAGATGA TGATGAAAGAAGGAACGGGTACAGTCCTGAGAGAAGAGGCCGTGACAGATCTCCTGACAGAAATTATAGTCGTGAACGATCCCCAAGTCCATATCGTAGA GATAGGGGTAGCCCAGACTACGGCCATGGACAGAATACAAATGCCAGACCTCAAAGAGGAAATCATGCTTATGAAAAAGCTGAAGGTCCTGAAAATGAAA GATACCGCAGCCGTTCCCCACCATCTCGGGAAAGGTCACGCTCTTGA
AA sequence Show only first row Show all	>Potri.002G153600.2 pacid=42780069 polypeptide=Potri.002G153600.2.p locus=Potri.002G153600 ID=Potri.002G153600.2.v4.1 annot-version=v4.1 MKAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEFGRKGRRLRVEWTKQERDSKPAGSRRSSANMTPSKTLFVIN FDPIHTRTRDLERHFDPYGKILSTRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAARDDDERRNGYSPERRGRDRSPDRNYSRERSPSPYRR DRGSPDYGHGQNTNARPQRGNHAYEKAEGPENERYRSRSPPSRERSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.002G153600 [exp]	0	1
AT3G26350			unknown protein		Potri.010G049000 [exp]	16.43	0.8585
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	16.43	0.8345
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.013G034000 [exp]	17.49	0.8179
AT3G54790			ARM repeat superfamily protein...		Potri.005G225400 [exp]	19.44	0.7668
AT2G44420			protein N-terminal asparagine ...		Potri.009G023200 [exp]	20.34	0.7625
					Potri.012G073800 [exp]	20.97	0.7869
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	21.65	0.8411
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.016G035400 [exp]	22.22	0.8053
AT3G47180			RING/U-box superfamily protein...		Potri.005G180300 [exp]	23.00	0.8142
AT2G38890			unknown protein		Potri.008G044500 [exp]	23.57	0.8506

Compare expression of checked genes

Potri.002G153600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.