Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45720 717 / 0 ARM repeat superfamily protein (.1.2) AT1G01830 644 / 0 ARM repeat superfamily protein (.1.2.3) AT5G50900 292 / 1e-91 ARM repeat superfamily protein (.1) AT1G61350 207 / 2e-59 ARM repeat superfamily protein (.1) AT2G05810 187 / 6e-52 ARM repeat superfamily protein (.1.2) AT5G58680 77 / 4e-15 ARM repeat superfamily protein (.1) AT2G23140 75 / 8e-14 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 72 / 7e-13 ARM repeat superfamily protein (.1) AT3G01400 61 / 6e-10 ARM repeat superfamily protein (.1) AT5G40140 62 / 8e-10 RING/U-box superfamily protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076500 [exp] 985 / 0 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.015G103700 [exp] 296 / 3e-93 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G104400 [exp] 292 / 6e-92 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 234 / 1e-69 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 232 / 6e-69 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.002G224400 [exp] 180 / 1e-49 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 171 / 3e-46 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 76 / 3e-14 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G165900 [exp] 74 / 1e-13 AT5G42340 671 / 0.0 Plant U-Box 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041369 [exp] 726 / 0 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 719 / 0 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016848 [exp] 330 / 3e-109 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 166 / 4e-44 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10002598 [exp] 161 / 2e-42 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10029995 [exp] 139 / 2e-35 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 133 / 4e-34 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10011514 [exp] 74 / 3e-13 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 72 / 6e-13 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 67 / 1e-11 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.002G153700.2 pacid=42780031 polypeptide=Potri.002G153700.2.p locus=Potri.002G153700 ID=Potri.002G153700.2.v4.1 annot-version=v4.1 ATGGTGGAAGATAGAGGGAAAGAAGTTGTGGTTGATATTCAGTCAGTTGAAGACTGGTTATGTCATGCACAAGAGCTTGTTCCTGTAGCCGTTGACAAGG CCAGGGAGGTTAAGGGCTTTCCTGGTAGATGGAAGATGATAATTTCCAAGTTGGAGCAGATCCCATCGCGTTTATCGGATTTGTCAAGCCACCCTTGCTT CTCCAAGAACTCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAAACACTCAAAGAAGCAATTGAATTGGCAATCTTATGTATGGGTGAGAATTATTGT GGTAAGCTTAGGACGCAGAGTGATCTTGATGCTTTATCTGGTAAACTGGATTTGAATTTACGAGATTGTGGACTTTTGATCAAGACTGGGGTGCTTGGCG AGGCTACTATGCCTTCAGCTGTGGCTGGCTCATCAACAGAACCTGAGGCTGCTATTCACAGCAATACAAGGGAATTGCTTGCCCGGCTTCAGATTGGGCA CTTGGAGGCGAAGCATAGAGCTCTCGACACGCTTGTTGAGGTCATGAAAGAGGATGAAAAGACTGTTTTGGCTGTTATGGGGCGGAGCAACATTGCTGCT TTAGTCCAGTTGTTAACAGCAACTTCTCCTTGCATTCGAGAAAAGACTGTTACTGCAATCTGCTCACTTGCAGAATCTGGAAGCTGTGAGAATTGGCTTG TTTCAGAGGGTGTTCTGCCACCTCTCATAAGGCTTGTTGAGTCAGGCAGCACTGTGGGCAAAGAGAAGGCTACAATTTCTCTCCAGAGATTGTCAATGTC AACAGAAACAGCCAGGGCAATTGTTGGGCATGGTGGTGTTCGACCACTGATTGAGATCTGTCGAACTGGTGATTCTGTTTCACAGGCTGCAGCGGCTTGC ACGTTGAAGAATATCTCAGCTGTCCCTGAGGTTCGACAAGATCTAGCTGAAGAAGGGATCGTGAAGGTAATGATCAATCTCCTAGATTGCGGGATTTTAT TGGGATCAAAAGAATATGCAGCAGAATGCTTGCAGAATCTCACTGCCAGCAATGACAATCTGAAAAGAGCTGTTATTTCAGAAGGCGGAATTCGAAGTCT ATTGGTATATCTTGATGGTCCACTACCCCAAGAATCTGCAGTTGGGGCATTAAGGAATTTGGTTAGCTCAATTTCAATGGAAATGCTGGTATCTTATTGT TTTCTACCCCGTTTGGTTCATGTGCTCAGGTCTGGATCACTGGGTGCCCAACAGGCTGCTGCAACTGCAATTTGCAGGGTTTGCACATCAGCAGATATGA AAAAATTGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAATTGCTCGAGGCTAAATCAAACAGTGTTAGAGAGGTTTCTGCGCAAGCAATTTCGAG TTTGGTATCCCTTTCCCACAACCGAAGAGAAGTTAAAAGGGATGATAAAAGTGTGCCAAATCTAGTGCAATTGCTTGATCCAAGTCCACAGAACACTGCA AAGAAATATGCTGTAGCGTCCCTTGCATCACTCGCTTCGAGTAAGAAACGTAAGAGGTTGATGATTTCATATGGAGCGATTGGATATCTCAAGAAGCTTA CTGAGATGGACATCCCTGGCGCTAAAAAGCTACTCGAGCGATTAGAAAAAAGGAAATTAAGAAGTTTGTTCGGTAAGAAATAG
AA sequence Show only first row Show all	>Potri.002G153700.2 pacid=42780031 polypeptide=Potri.002G153700.2.p locus=Potri.002G153700 ID=Potri.002G153700.2.v4.1 annot-version=v4.1 MVEDRGKEVVVDIQSVEDWLCHAQELVPVAVDKAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNSLCKEQLQAVSKTLKEAIELAILCMGENYC GKLRTQSDLDALSGKLDLNLRDCGLLIKTGVLGEATMPSAVAGSSTEPEAAIHSNTRELLARLQIGHLEAKHRALDTLVEVMKEDEKTVLAVMGRSNIAA LVQLLTATSPCIREKTVTAICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSTETARAIVGHGGVRPLIEICRTGDSVSQAAAAC TLKNISAVPEVRQDLAEEGIVKVMINLLDCGILLGSKEYAAECLQNLTASNDNLKRAVISEGGIRSLLVYLDGPLPQESAVGALRNLVSSISMEMLVSYC FLPRLVHVLRSGSLGAQQAAATAICRVCTSADMKKLVGEAGCIPLLIKLLEAKSNSVREVSAQAISSLVSLSHNRREVKRDDKSVPNLVQLLDPSPQNTA KKYAVASLASLASSKKRKRLMISYGAIGYLKKLTEMDIPGAKKLLERLEKRKLRSLFGKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45720			ARM repeat superfamily protein...		Potri.002G153700 [exp]	0	1
AT1G30540			Actin-like ATPase superfamily ...		Potri.014G143500 [exp]	9.64	0.7611
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.009G134200 [exp]	10.58	0.7309
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	11.13	0.7759
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	13.96	0.7403
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	14.49	0.7174
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	14.69	0.7176
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	14.96	0.7303
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.018G023600 [exp]	21.42	0.7261
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.004G204700 [exp]	22.44	0.6921
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	24.49	0.6899

Compare expression of checked genes

Potri.002G153700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.