Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45740 402 / 6e-144 PEX11D peroxin 11D (.1.2.3) AT1G01820 396 / 9e-142 PEX11C peroxin 11c (.1) AT3G61070 381 / 5e-136 PEX11E peroxin 11E (.1.2.3) AT1G47750 45 / 2e-05 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076400 [exp] 438 / 3e-158 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3) Potri.009G133900 [exp] 219 / 6e-73 AT2G45740 206 / 3e-68 peroxin 11D (.1.2.3) Potri.002G134000 [exp] 49 / 8e-07 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 47 / 3e-06 AT1G47750 327 / 8e-114 peroxin 11A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041368 [exp] 402 / 8e-144 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10036560 [exp] 397 / 8e-142 AT1G01820 416 / 2e-149 peroxin 11c (.1) Lus10003945 [exp] 50 / 6e-07 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 44 / 5e-05 AT1G47750 318 / 4e-110 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [poplar] [flax] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Potri.002G153800.2 pacid=42779061 polypeptide=Potri.002G153800.2.p locus=Potri.002G153800 ID=Potri.002G153800.2.v4.1 annot-version=v4.1 ATGAGTACACTCGATGCAACTAGAGCAGAACTTGCTCTTATAGTTCTGTATCTGAATAAGGCTGAAGCCAGGGACAAGATTTGCCGGGCAATTCAATATG GTTCAAAATTCTTGAGCGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTAGCTCGGAAAGTTTTTCGTCTTTTTAAGTTTGTCAA TGACCTGCATGGTCTTATTAGTCCAGTTTCTCAAGGGACCCCCTTGCCTCTCGTTTTATTGGGAAAGTCCAAAAATGCGTTGTTGTCAACTTTCTTGTTT CTTGATCAAATTGTTTGGCTTGGAAGAAGTGGCATTTACAAGAACAAAGAACGTGTTGACCTAATTGGCCGAATATCCCTTTTCTGTTGGATGGGATCCT CAATTTGTACTACTTTGGTTGAGGTTGGGGAGCTTGGGAGGCTTTCTGTGTCAATGAAGAAGTTAGAGAAGGAGCTTAAGGATGGTGAAAAACATCATAA TGAGCAATACCGTGCCAAACTTAAAAAATCAAATGAAAGGTCTCTAGCCCTTGTCAAATCAGCCATGGACATTGTAGTTGCTGTTGGGCTACTTCAATTG GCACCCAAGAAAGTCACTCCTCGTGTTACAGGAGCTTTTGGAGTTGTTACCTCTCTAATCTCTTGCTACCAGTTGCTTCCATCACCACAAAAGCCAAAGA CAAATTGA
AA sequence Show only first row Show all	>Potri.002G153800.2 pacid=42779061 polypeptide=Potri.002G153800.2.p locus=Potri.002G153800 ID=Potri.002G153800.2.v4.1 annot-version=v4.1 MSTLDATRAELALIVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLISPVSQGTPLPLVLLGKSKNALLSTFLF LDQIVWLGRSGIYKNKERVDLIGRISLFCWMGSSICTTLVEVGELGRLSVSMKKLEKELKDGEKHHNEQYRAKLKKSNERSLALVKSAMDIVVAVGLLQL APKKVTPRVTGAFGVVTSLISCYQLLPSPQKPKTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.002G153800 [exp]	0	1
AT3G56010			unknown protein		Potri.010G186800 [exp]	2.44	0.9795
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	2.64	0.9837
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	3.16	0.9811
AT1G73885			unknown protein		Potri.015G053800 [exp]	6.63	0.9794
AT5G66720			Protein phosphatase 2C family ...		Potri.007G028900 [exp]	7.00	0.9540
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	8.48	0.9763
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.002G227300 [exp]	8.83	0.9694	ATCSLB05.1
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	9.38	0.9743
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	10.95	0.9695
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Potri.010G078800 [exp]	11.22	0.9755

Compare expression of checked genes

Potri.002G153800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.