Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33060 137 / 1e-33 NAC ANAC014 NAC 014 (.1.2) AT4G35580 132 / 2e-32 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G65910 132 / 5e-32 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 130 / 5e-32 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G29035 125 / 1e-31 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT5G17260 128 / 2e-31 NAC ANAC086 NAC domain containing protein 86 (.1) AT5G24590 128 / 2e-31 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT5G39610 124 / 2e-31 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT1G76420 121 / 6e-30 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32510 119 / 1e-29 NAC ANAC011 NAC domain containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075901 [exp] 426 / 1e-142 AT4G17980 106 / 1e-25 NAC domain containing protein 71 (.1) Potri.002G154000 [exp] 316 / 7e-101 AT1G33060 154 / 1e-40 NAC 014 (.1.2) Potri.002G182400 [exp] 272 / 4e-83 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G108100 [exp] 174 / 9e-49 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.014G107700 [exp] 130 / 1e-33 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.012G007500 [exp] 135 / 5e-33 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.011G149300 [exp] 133 / 2e-32 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.010G174600 [exp] 128 / 2e-32 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.002G182000 [exp] 124 / 5e-32 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010148 [exp] 137 / 8e-34 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 134 / 8e-33 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 132 / 2e-32 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10030978 [exp] 127 / 9e-32 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 125 / 4e-31 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10015076 [exp] 123 / 2e-30 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 122 / 3e-30 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015587 [exp] 124 / 8e-30 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10032919 [exp] 124 / 1e-29 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10026879 [exp] 120 / 1e-29 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G154100.1 pacid=42777039 polypeptide=Potri.002G154100.1.p locus=Potri.002G154100 ID=Potri.002G154100.1.v4.1 annot-version=v4.1 ATGTTGAAAGCATGCTCACACTGTCCATCCACTCCTCTCTCTTGTTTCCAGCTTCCCACTGAAGTGAGCACTTCTCCATTCTTTCAAGACCAGATTCCTG TTTTAGGAAGAGTAATGAATTCCGATTTCTCATCAGTCATGGCGAATCCAATAAGCTTAATGCAATTAATGAAAGCTGGATTTAAATTTCAACCATCCCC TGAAGAATTAATAATCAATTATTTGGTGCCGAAATCACGTGGTGGTATTGTGGAAGGCGTGCCCATGGCAGAGGTTAACCTCTGCGAGCATGAACCATGG GATCTACCTAATAAATCGATTATAAATTTAGCTGATCAAGAGTGGTATTTCTTTTGCCCTCGCGATCTTAAGTACAAGAAGAAGAGCAGACTTTGTAATA GAAAAACAAAGGCCGGATACTGGAAGTTGACCTGCAAGATAAAGCCAATCATGGCCGGGCATACTAAGAAAAACATTGGTGTCATGAAGACTTTGACTTT CTATAAAACAGCTCGGCCGAAAGATGCGAGGACTGGCTGGATGATATACGAATTTGACATCGTCACCAATTCTAGCCTCTCTAAAAAGGGTCAATATGTT CTCTGTAGATTGGAGAATAGATCAGATGAGAGGATCAAGAAAGGTGAACAAAATCACCTTATGGCTTCAGTCTCTGTTTCTGAAGCTGTACCAGGTCAGA GTATGACTTCTGATTTTGAAAATCAAAACTCAAGTGAGATGGTTGTGAGTTTAGCTTCTGATGATAGTGAATTAAGCCACCATATGGGCTCTGATTCTGG AAACCAAAACTCAAGTGAGCTGACCCCAGCTCGCCAAGTTAGTGAATTAAGCCACTACATGGCTTCTGATTTTAGAAATCAGAACTCATGTAAGTCAGGG TCTAATTTAGCTTACGATGGAAGTGGTTCGTGCCACTCCACGGCTTTTAACTCAGAAACTCAATACCGGAATCAGCCAACAGTTGGTTCAGTTTGTATTG TCAACAAAAACCATTATATGGCTTTTGATTTGGAAAATCAAAACCCAAATGAACTGCTGACAGTTGATTCAGTTTATACTGTCAGCAAAAACCATTATAT GGCCCCGAATGAGCTGCCGACAGTTGATTCAGCTTATACTGTCAGCAAAAACCATTACATGGCTTTTGATTTGGAAAATCAAAACCCAAATGAACTGCTG ACTGTTGATTCAGTTTATACTGTCAGCAAAAACCATTATATGGCCCCGAATGAGCTGCCGACAGTTGATTCAGCTTATACTGTCAGCAACAACCATTATA TGGCTTTTGATTCGGAGTATCAAAACCCAAATGAGCTGCTGACAGCTGATTCAGCTTATATTGTCGACAAAAACCATTATATGGCTTTTGATTCGGAGTA TCAAAAGCCCAATGAGCTGCTGACAGCTGATTCAGTCTATGATGTCAGTGAAAGTCAGTACATGCCTTTTGATTCAGAAAATCAAAATTTGAACAATATA AATTCTATATCAACTTATGAGAACTCGTTAATGGCTTCTCATGGTTTTGAAAATAAAAATCCACCCTTTCCACCTGAAGGTGAATGTGGTACTTCCGTGG TGATGCCTTTTAAATTTATAAACCAATCAACCTATGATGAAAGCGAACTAAGTAGCCTTTTGGCTTCTGATTTTGGAAACCAAAATCTAGACAAGGAAAT TAATTTATCAGCCTTCGATGAAGGTGAATGGAGTTCTCTCACAGCAATACCTTCGGATTTTGGAAATCAAAATCCTTCTAAGAAGGCTGATATTTCAACC CATGAAGAAGGTTACTCGAGTTACTTGACGGCCCCTTTTTCAGAAAATAACCTAGCTGATGTCTCGCTTCCAGATGTAAGCCCTGAACTTCTAGCAGGGG CGCTGGAAGCAATTTTTGAGCAAAAAAAAAGCCCCAACACAGTACTTCAGCCGCCTGTGTGCGTGGAGGAAAGCCACTCCTACATGGACTATGATACCTC CACGTCTACTTGA
AA sequence Show only first row Show all	>Potri.002G154100.1 pacid=42777039 polypeptide=Potri.002G154100.1.p locus=Potri.002G154100 ID=Potri.002G154100.1.v4.1 annot-version=v4.1 MLKACSHCPSTPLSCFQLPTEVSTSPFFQDQIPVLGRVMNSDFSSVMANPISLMQLMKAGFKFQPSPEELIINYLVPKSRGGIVEGVPMAEVNLCEHEPW DLPNKSIINLADQEWYFFCPRDLKYKKKSRLCNRKTKAGYWKLTCKIKPIMAGHTKKNIGVMKTLTFYKTARPKDARTGWMIYEFDIVTNSSLSKKGQYV LCRLENRSDERIKKGEQNHLMASVSVSEAVPGQSMTSDFENQNSSEMVVSLASDDSELSHHMGSDSGNQNSSELTPARQVSELSHYMASDFRNQNSCKSG SNLAYDGSGSCHSTAFNSETQYRNQPTVGSVCIVNKNHYMAFDLENQNPNELLTVDSVYTVSKNHYMAPNELPTVDSAYTVSKNHYMAFDLENQNPNELL TVDSVYTVSKNHYMAPNELPTVDSAYTVSNNHYMAFDSEYQNPNELLTADSAYIVDKNHYMAFDSEYQKPNELLTADSVYDVSESQYMPFDSENQNLNNI NSISTYENSLMASHGFENKNPPFPPEGECGTSVVMPFKFINQSTYDESELSSLLASDFGNQNLDKEINLSAFDEGEWSSLTAIPSDFGNQNPSKKADIST HEEGYSSYLTAPFSENNLADVSLPDVSPELLAGALEAIFEQKKSPNTVLQPPVCVEESHSYMDYDTSTST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154100 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	5.09	0.7174
AT3G47510			unknown protein		Potri.015G062300 [exp]	6.85	0.7888
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.008G145800 [exp]	11.22	0.7333
AT1G22170			Phosphoglycerate mutase family...		Potri.005G078100 [exp]	11.48	0.7419
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	19.59	0.7330
AT3G60966			RING/U-box superfamily protein...		Potri.014G043200 [exp]	20.19	0.7348
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.002G005000 [exp]	20.88	0.6519
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G127400 [exp]	34.58	0.6817
AT3G57200			unknown protein		Potri.006G045500 [exp]	35.62	0.7316
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	37.10	0.6769

Compare expression of checked genes

Potri.002G154100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.