Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01310 362 / 2e-127 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089100 [exp] 390 / 3e-138 AT4G01310 311 / 3e-107 Ribosomal L5P family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007915 [exp] 377 / 5e-133 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 362 / 2e-126 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1) Lus10033169 [exp] 247 / 3e-83 AT4G01310 238 / 3e-80 Ribosomal L5P family protein (.1) Lus10010251 [exp] 194 / 6e-63 AT4G01310 179 / 2e-57 Ribosomal L5P family protein (.1) Lus10036391 [exp] 79 / 7e-19 AT4G01310 82 / 1e-20 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00281 [poplar] [flax] Ribosomal_L5 Ribosomal protein L5 CL0652 [poplar] [flax] PF00673 [poplar] [flax] Ribosomal_L5_C ribosomal L5P family C-terminus
Representative CDS sequence Show only first row Show all	>Potri.002G154600.1 pacid=42779196 polypeptide=Potri.002G154600.1.p locus=Potri.002G154600 ID=Potri.002G154600.1.v4.1 annot-version=v4.1 ATGGCCACTACTTCGCTCTTATCCTCCTCGGCGGCGTCGTTTTACGGCCGATTCCCCACTCTCCCACCGCACTTAAACGCAAGAGTAACGTACGGAAGCC GGAATGGGGTGGTGTCAGTGAGAGCTACTGGAGATGTTGTTTTGGTGGACAAATCAGAAGCAGAGAAAAGCAATCGGCTCAAAACCACATTCCTTGAAAA AATCGTCCCTTTGCTGATAGAAGAGTTCAGCTACACTAACATTCACCAGGTTCCAAAAATTCAGAAGGTTGTGGTGAATTGTGGGATTGGAGATGCTGCG CAGAATGCTAAGGGGTTGGACGCAGCGATAAATGATTTGGCTCTTATCACAGGCCAAAGACCCGTAAAGACGCGGGCCAGGAATTCGGTTGCGACCTTCA AGATTAGGGAAGGCCAACCACTTGGTATTGCTGTTACACTCAGAGGAAACCTGATGTACTCGTTCTTAGATCGACTTGTTAACTTGGGGCTGCCTAGGAC AAGGGATTTCCAAGGTGTGACTGCAAACAGCTTTGATGGACATGGCAACTACAGCGTTGGAATTCGCGACCAGAGTGTGTTCCCAGAGATTAGGTTTGAT GCGGTTGGTAAAGCCAGGGGAATGGATGTGTGCATTGCAACCACAGCTAACACCGATCAAGAAGCGCAAAGACTCTTGGCTCTCATGGGTATGCCATTTA GAGAAGGTGGTGGTGGTGGTGGTGCTACCGCTCAGCCTCGCAAGAAGAAATTGAAGGCACACCACTTTGATTCAAAATCGAAGGGAAGGAGTAGGCGATG A
AA sequence Show only first row Show all	>Potri.002G154600.1 pacid=42779196 polypeptide=Potri.002G154600.1.p locus=Potri.002G154600 ID=Potri.002G154600.1.v4.1 annot-version=v4.1 MATTSLLSSSAASFYGRFPTLPPHLNARVTYGSRNGVVSVRATGDVVLVDKSEAEKSNRLKTTFLEKIVPLLIEEFSYTNIHQVPKIQKVVVNCGIGDAA QNAKGLDAAINDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGNLMYSFLDRLVNLGLPRTRDFQGVTANSFDGHGNYSVGIRDQSVFPEIRFD AVGKARGMDVCIATTANTDQEAQRLLALMGMPFREGGGGGGATAQPRKKKLKAHHFDSKSKGRSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	0	1
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	2.00	0.9837
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	2.00	0.9799
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G068300 [exp]	2.82	0.9783
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.010G150300 [exp]	2.82	0.9811
AT2G45290			Transketolase (.1)		Potri.002G146300 [exp]	3.87	0.9727
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	4.24	0.9773
AT1G48450			Protein of unknown function (D...		Potri.012G042400 [exp]	4.47	0.9691
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	4.58	0.9787
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	5.74	0.9809	Pt-RPL27.5
AT4G15510			Photosystem II reaction center...		Potri.005G010700 [exp]	6.00	0.9767

Compare expression of checked genes

Potri.002G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.