Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ANL2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 1058 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 1011 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 781 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 778 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 754 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT5G52170 729 / 0 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G73360 605 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 588 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 575 / 0 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G79840 565 / 0 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 1485 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 874 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 853 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 812 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 802 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 790 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 767 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 687 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 657 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036567 [exp] 1147 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 778 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 776 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 775 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 773 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027437 [exp] 768 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 748 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10007650 [exp] 738 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10031321 [exp] 688 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10037554 [exp] 588 / 0 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.002G154700.1 pacid=42779117 polypeptide=Potri.002G154700.1.p locus=Potri.002G154700 ID=Potri.002G154700.1.v4.1 annot-version=v4.1 ATGAGTTTTGGGGGTTTCCTTGAAAACACTAGTCCTGGTGGTGGTGGCGCAAGAATTGTGGCTGATATACTTTATAACAATAACAACAACATGCCCACTG GTGCAATAGCTCAGACTCGCCTTGTCTCTCCTTCTATCACTAAATCCATGTTCAACTCTCCTGGACTCTCTCTAGCCCTTCAACAGCCAAACATAGATGG TCAAGGAGATATAACTAGAATGGCTGAGAACTTTGAGACAAGTGTGGGTAGGAGAAGCAGAGAAGAGGAACATGAGAGCAGATCTGGTAGTGATAACATG GATGGTGCGTCTGGTGACGATCAAGATGCAGCTGATAATCCTCCAAGAAAAAAGAGATACCACCGACACACTCCACAACAAATCCAAGAACTTGAAGCTT TGTTTAAGGAATGTCCTCATCCTGACGAGAAACAAAGATTGGAGCTTAGTAGAAGGCTGTGCTTGGAGACTAGGCAAGTCAAGTTCTGGTTTCAAAATCG TAGAACCCAAATGAAGACTCAACTGGAGCGCCATGAGAACTCATTACTCAGGCAAGATAACGACAAGCTTCGAGCAGAAAACATGTCCATAAGAGATGCC ATGAGAAATCCATCGTGCTCAAACTGTGGTGGTCCTGCGATAATTGGTGATATGTCACTTGAAGAACAGCATTTGAGGATTGAGAATGCTAGATTAAAAG ATGAACTAGATCGAGTTTGTGCACTTGCGGGCAAGTTCTTGGGTCGCCCCATATCTTCGTTAGCTTCTTCACTTAGCCCTCCGACGAATTCAAGCCTGGA ACTTGCAGTTGGTAGTAATGGTTTTGCTGGTTTAAGCACCATTGCTACAACATTGCCTTTGGGACCTCATTTTGAAGGTGGGATTTCTGGTGCTTTGTCT ATGGTAACTCAAACTAGACTAGCAACAGCTGGTGTTACTGGTATTGATAGATCAGTAGAGAGATCCATGTTCTTGGAGTTGGCTTTAGCTGCCATGGATG AATTGGTGAAAATGGTTCAGACGGATGAGCCTCTTTGGATCGGGAGCTTTGAGGGTGGTAGAGAAATATTGAACCATGAGGGGTACTTGAGAACCTTCAC TCCTTGCATTGGAATGAAGCCTAGTGGCTTTGTTAGTGAGGCTTCTAGAGAGACTGGTATGGTAATCATAAACAGTTTGGCCTTAGTTGAGACACTGATG GATTCGAACCGATGGGCAGAAATGTTTCCTTGTATGATTGCAAGGACCTCTACCACTGATGTGATAGCCAGTGGAATGGGGGGAACTAGAAATGGTTCAC TTCAGTTGATGCAAGCCGAGCTCCATGTTTTATCCCCATTGGTTCCGGTGCGTGAGGTCAATTTTCTCCGATTTTGCAAGCAGCACGCAGAGGGGGTTTG GGCTGTTGTTGATGTATCCATTGATACCATCCGAGATACTTCCGGTGCACCACCGACATTTGTGAACTGCAGGAGGCTTCCTTCTGGTTGTGTGGTGCAA GATATGCCCAATGGGTACTCCAAGGTTACATGGGTTGAGCATGCACAATATGATGAAAGGCAAATACACCAGCTCTATCGGCCGGTGATAAGCTCCGGCA TGGGCTTCGGTGCCCAACGATGGATAGCTACCCTTCAACGTCAATGCGAGTGTTTGGCCATCCTCTTGTCCTCCAATGTACCTAGTAGAGACCACACAGC GATAACTACAAGTGGTCGCCGAAGCATGTTGAAGCTGGCGCAAAGAATGACCGATAACTTCTGTGCTGGGGTTTGTGCCTCCACAGTGCACAAATGGAAC AAGCTGAATGCCGGAAATGTTGATGAAGATGTTAGGGTTATGACCCGAAAGAGTGTCGATGATCCTGGTGAGCCACCAGGCATAGTTTTGAGCGCTGCGA CCTCTGTTTGGCTACCTGTTTCTCCACAAAGGCTCTTTGATTTCCTACGCAATGAACGACTCAGAAGCGAGTGGGACATACTCTCCAACGGTGGACCAAT GCAGGAAATGGCCCACATTGCTAAAGGCCAGGATCACGGCAACTGTGTCTCTCTCCTACGTGCTAGCGCCATGAATGCTAACCAGAGTAGCATGCTAATA CTGCAAGAGACATGCATAGATGCAGCAGGCTCTCTTGTAGTGTACGCTCCCGTTGACACTCCGGCCATGCACGTAGTGATGAACGGTGGTGATTCGGCTT ACGTGGCGCTTCTTCCGTCAGGGTTTGCTATCGTACCGGATGGGCCTGGTTCACGTGACCCCCCATCGACTAATGGCGGCCCGACTGCTAATAATGTCGG TGGCCAAGAGAGGGTGAGTGGGTCCCTTTTGACGGTGGCCTTCCAAATATTGGTGAATAGTCTACCTACGGCGAAGCTTACAGTAGAATCTGTGGAGACA GTCAACAACCTTATTTCATGCACTGTCCAAAAGATCAAGGCTGCTCTCCAATGTGAAAGCTGA
AA sequence Show only first row Show all	>Potri.002G154700.1 pacid=42779117 polypeptide=Potri.002G154700.1.p locus=Potri.002G154700 ID=Potri.002G154700.1.v4.1 annot-version=v4.1 MSFGGFLENTSPGGGGARIVADILYNNNNNMPTGAIAQTRLVSPSITKSMFNSPGLSLALQQPNIDGQGDITRMAENFETSVGRRSREEEHESRSGSDNM DGASGDDQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQDNDKLRAENMSIRDA MRNPSCSNCGGPAIIGDMSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLASSLSPPTNSSLELAVGSNGFAGLSTIATTLPLGPHFEGGISGALS MVTQTRLATAGVTGIDRSVERSMFLELALAAMDELVKMVQTDEPLWIGSFEGGREILNHEGYLRTFTPCIGMKPSGFVSEASRETGMVIINSLALVETLM DSNRWAEMFPCMIARTSTTDVIASGMGGTRNGSLQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRDTSGAPPTFVNCRRLPSGCVVQ DMPNGYSKVTWVEHAQYDERQIHQLYRPVISSGMGFGAQRWIATLQRQCECLAILLSSNVPSRDHTAITTSGRRSMLKLAQRMTDNFCAGVCASTVHKWN KLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRNERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLI LQETCIDAAGSLVVYAPVDTPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRDPPSTNGGPTANNVGGQERVSGSLLTVAFQILVNSLPTAKLTVESVET VNNLISCTVQKIKAALQCES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	0	1	Pt-ANL2.1
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	1.00	0.9672
AT1G79160			unknown protein		Potri.007G067300 [exp]	2.00	0.9346
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	3.00	0.9345
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	4.00	0.9210
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	4.69	0.9193	HNL.4
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	5.47	0.9309
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	6.00	0.9173
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.014G075200 [exp]	6.00	0.9337	Pt-ANL2.2
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	6.48	0.9039	Pt-COL1.1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	7.07	0.9199

Compare expression of checked genes

Potri.002G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.