Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00720 771 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT5G14640 663 / 0 ATSK13 shaggy-like kinase 13 (.1) AT5G26751 655 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 654 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT3G61160 648 / 0 Protein kinase superfamily protein (.1.2) AT1G57870 620 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT1G06390 618 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT1G09840 617 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT2G30980 614 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT4G18710 605 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075100 [exp] 917 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.005G005400 [exp] 664 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 659 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 658 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 655 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.003G005900 [exp] 623 / 0 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.004G225700 [exp] 621 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.011G068600 [exp] 595 / 0 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.004G059000 [exp] 594 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018850 [exp] 786 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 772 / 0 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 770 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10013088 [exp] 659 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 654 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10001519 [exp] 653 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 651 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10029240 [exp] 590 / 0 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10007291 [exp] 589 / 0 AT4G18710 709 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10025395 [exp] 588 / 0 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G155000.2 pacid=42777528 polypeptide=Potri.002G155000.2.p locus=Potri.002G155000 ID=Potri.002G155000.2.v4.1 annot-version=v4.1 ATGAATGTGATGCGTAGATTAAAGAGCATTGCTTCAGGTCGAACTTCTATATCATCCGATCCTGGTGGGGATGCTGGAACAAAGAGGGCTAAGATTGATC AAGAAATAGAACGAAAGGTTGATGAAGAATCTTATTTAGTTGAAAGAAGTGTCACAGATCAGGAGCAGCATATGGCTTCTACATCACAGGAAAATGCTGC GAGCACATCCAACATTACTTCGGTGACAAGAACAGAAAAATCAGGCTATGATCAGCTTCCCAAAGAGATGCATCAAATGAAGATCAGAGATGAAAAAACC ACTAGTCATGATGAAAAGGAAGTGGAAGCTGCCATTGTGAGTGGCAATGGGACAGAAACTGGTCAGATTATTGCAACCACAGTAGGTGGTCAGGATGGAC AGCCAAAGCAGACAATCTCATATGTGGCAGAACGCATGGTTGGCACGGGTTCATTTGGTGTTGTCTACCAGGCTAAGTGCCTGGAAACTGGTGAAGCAGT TGCAATAAAGAAGGTATTGCAGGATAAGAGATACAAGAACAGAGAACTTCAAGTCATGCGCCTTCTTGACCATCCTAATGTCGTTCAGCTGAAACATTGT TTCTATTCAACTACTGAAAAAGATGAACTATATCTTAACCTTGTTCTGGAGTATATATCTGAGACTGTCCATCGAGTTTCAAGGCACTTTAACAGGATGA ATCACCAACACATGCCCATTATATATGTTCAACTATATACTTACCAGATTTGCCGTGCACTAAATTACTTGCACCATGTGCTTGGGGTGTGCCATCGTGA CATTAAGCCACATAATTTACTGGTCAATCCCCATACTCATCAGCTAAAAATCTGTGATTTTGGTAGTGCAAAGATGCTGGTGCCAGGGGAACCCAACATA TCATATATCTGCTCACGGTATTATAGGGCACCAGAACTTATATTTGGTGCTTCAGAGTACACAAGTGCCATTGATATCTGGTCTGTTGGTTGTGTCTTGG CCGAACTTCTTCTTGGACAGCCTCTTTTTCCTGGGGAAAGCAGTGTCGATCAGCTTGTGGAAATTATTAAGGTCCTGGGGACACCAACCCGAGAAGAAAT TAAGTGCATGAATCCCAATTACACAGAATTCAAGTTCCCTCAGATCAAGGCTCACCCATGGCACAAGATATTTCACAAACGAATGCCACCTGAAGCAGTG GATCTCGTATCAAGGCTGCTTCAGTATTCACCAAACATGCGGTGCACTGCTTTGGAGGCATGTGCACACCCCTTTTTTGATGATTTGAGACATGCAAATG CATGCTTGCCTAATGGGCGTGCGCTACCTCCTCTATTCAATTTTACTGCCCAAGAGTTGGCTGGGGCATCAACTGAACTGCGTCAACGTCTCATTCCTGA TCATGTATGA
AA sequence Show only first row Show all	>Potri.002G155000.2 pacid=42777528 polypeptide=Potri.002G155000.2.p locus=Potri.002G155000 ID=Potri.002G155000.2.v4.1 annot-version=v4.1 MNVMRRLKSIASGRTSISSDPGGDAGTKRAKIDQEIERKVDEESYLVERSVTDQEQHMASTSQENAASTSNITSVTRTEKSGYDQLPKEMHQMKIRDEKT TSHDEKEVEAAIVSGNGTETGQIIATTVGGQDGQPKQTISYVAERMVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRLLDHPNVVQLKHC FYSTTEKDELYLNLVLEYISETVHRVSRHFNRMNHQHMPIIYVQLYTYQICRALNYLHHVLGVCHRDIKPHNLLVNPHTHQLKICDFGSAKMLVPGEPNI SYICSRYYRAPELIFGASEYTSAIDIWSVGCVLAELLLGQPLFPGESSVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAV DLVSRLLQYSPNMRCTALEACAHPFFDDLRHANACLPNGRALPPLFNFTAQELAGASTELRQRLIPDHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Potri.002G155000 [exp]	0	1
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.010G117500 [exp]	7.48	0.7805
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	10.39	0.8476
AT4G20820			FAD-binding Berberine family p...		Potri.001G461500 [exp]	11.35	0.7302
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	12.48	0.8571	ACO1
AT5G13500			unknown protein		Potri.001G275600 [exp]	13.63	0.6947
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	18.02	0.7742	SQS1.2
					Potri.008G115533 [exp]	19.74	0.8482
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	21.35	0.8492
AT3G57450			unknown protein		Potri.012G032500 [exp]	24.00	0.8407
					Potri.019G062666 [exp]	25.78	0.8203

Compare expression of checked genes

Potri.002G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.