Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61170 931 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 588 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 587 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 585 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 554 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 530 / 2e-176 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 526 / 8e-176 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 520 / 1e-174 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G09950 526 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 522 / 4e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 657 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 608 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 582 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 579 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G184800 [exp] 574 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G237100 [exp] 566 / 0 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 561 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 558 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 551 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022890 [exp] 1080 / 0 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 1061 / 0 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 616 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 603 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 598 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 589 / 0 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 585 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 578 / 0 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 560 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 554 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G155100.1 pacid=42778191 polypeptide=Potri.002G155100.1.p locus=Potri.002G155100 ID=Potri.002G155100.1.v4.1 annot-version=v4.1 ATGCACAAATCAAGATTTTTAAATATCTCTCGTGATTATCTACACAGTGCTGCAAAGTCAAATGGATTTAGTTATTCAAGACTAGAATCGAACAGGGTTC TCAAAGATTTGTCAAAACGGGGTCGAATTGATGATGCGCGGAATTTGTTTGATAAAATGCTTGACAGAGATGAGTTTTCATGGAACACAATGGTTGCTGG TTATGCCAATTCAGGGAGATTGACTGAAGCGAAAAAATTGTTTTATGAGACCCCAATGAAGAGTTCGATCACCTGGACGAGTCTTTTATCGGGGTATTGT AGATATGGTTTTGAAAATGAAGCTTTTGAATTGTTTTTGGAAATGCAGCTTGAAGGACAAAGGCCAAGTCAATACACGTTAGGGAGTGTTCTTGGGTTGT GTTCGACAAATGGTTTGCTTCAAAAGGGGGAACAAATTCATGGTTATGCGATAAAGACTTGGTTTGATTGGAATGTGTTTGTTGTTACTAGTTTAGTTGA CATGTATGGGAAGTGCAAATGTGTTTTTGAAGCTGAGTGTCTTTTTGAAATGGTGGCTGATTGCAAATACAATGCAGTCTGGAGTGCTATGCTTGCTGGA TATTCTCATTATGGGTATGGGTATAAAGCGATTGAGTGTTTTCGAAACATGAGAAATGAAGGGGTTGAGTCTAATCAATTTACTTTTCCAAGTATTTTGA GAGCTTGCGGAGCGGTTATGGCATGTGATTTTGGGTCTCAAGTACATGGTTGCATAGTCAGGACTGGTTTTGGTGCTAACATTTTCGTTCAGAGTGCACT GGTTGATATGTATGCAAAGTGCAGGGACTTGAATAGTGCAAAGAGGGTGTTGGGGAATATGGAGTTTGATGATGAGGTTTCTTGGAACTCCTTGATTTTG GGGTGTGTGAGGGAGGGGTTTGAAGAGGACGCTCTATCTTTCTTCCAAAAAATGCGTTCTAGAGATATGAAGATTGATGAATATACGTTGCCATCTGTTT TGAACTCTTTTGCATCCATGAAGGTTATGCAGAATGCAATTTCTGTCCATTGTTTGATAATCAAAACTGGCTTTGAAGCATATAAGCTTGTCAATAATGC TCTTATTGACATGTATGCCAAACAGGGAAAGTTAGATTGTGCAATCATGGTGTTCAGCAAGATGGTAGATAAGGATGTTGTCTCTTGGACCTCCCTTGTT ACAGGATACTCGCATAATGGCTCTTATGAGGAAGCTATCAAGCTATTTTGTAAAATGAGAATTTCAGGTGTATATCCTGATCAAATTGCTGTTGCCAGCG TTTTGAGTGCCTGTGCAGAACTGACAGTTATGGACTTTGGACAACAGATTCATGCGACCCTTGTTAAATCTGGTCTTGAGTCATCCTTATCAGTTGATAA TTCTCTTGTGACAATGTATGCTAAGTGTGGCAGTATAGTCGATGCAAATCGTGCCTTTGACAATATGCCAACTCGGGATGTCATCAGCTGGACAGCTCTA ATAGTCGGATATGCACAAAATGGCAGAGGAAAGCATTCTCTACAATTTTATGATCAAATGATTGCCACTGGAACAAAGCCAGACTACATCACGTTCATAG GTTTACTTTTTGCTTGCAGCCATAATGGTCTTTTGGGAAGTGGCCGTGCCTACTTTGAAGCAATGGATAAAGTATATGGGATCAAACCAGGTCCTGAACA CTATGCTTGCATGATTGACCTTTTGGGGCGCTCAGGAAAACTTGCTGAGGCCAAAGGATTACTGAATCAAATGGTTGTAGCGCCAGATGCAGTAGTATGG AAGGCCCTGCTTGCTGCATGCAGGGTACATAAGGAGCTTGAATTGGGAGAGATGGCAGCTAAGAACCTTTTTGAATTGGAACCCATGAACTCCATGCCTT ATGTTATGTTATCTAATATGTATTCCGCAGCTGGTAAATGGGAAGATGCTGCGAGAATCAGACGACTGATGAGGTCCAGGGGAATATGTAAGGAACCTGG GTACAGTTGGATTGAGACAAACAGCAAAGTGAGCACCTTTATGTCTGAAGATAGAAACCATCCATTGAGAAATGAGATTTATTCAAAGATAGATGAAATT ATTATGTTGATCAAGGAGGCTGGTTATGTGCCAGACATGAGTTTTGCCCTTCATGACACAGATGATGAAGTCAAGGAGCTTGGTCTAGCTTATCACAGCG AGAAGCTAGCTGTTGCCTTTGGGCTTCTCACCGTGCCACAAGGAGCACCAATTCGTATTTTCAAGAATCTCCGTGTTTGCGGCGACTGCCATACAGCTAT GAAATACACGTCCAAAGTATATGCTCGTCATATAATTTTGAGGGATTCAAATTGTTTCCATCATTTCACAGAAGGAAGATGCTCTTGTGGAGATTATTGG TAG
AA sequence Show only first row Show all	>Potri.002G155100.1 pacid=42778191 polypeptide=Potri.002G155100.1.p locus=Potri.002G155100 ID=Potri.002G155100.1.v4.1 annot-version=v4.1 MHKSRFLNISRDYLHSAAKSNGFSYSRLESNRVLKDLSKRGRIDDARNLFDKMLDRDEFSWNTMVAGYANSGRLTEAKKLFYETPMKSSITWTSLLSGYC RYGFENEAFELFLEMQLEGQRPSQYTLGSVLGLCSTNGLLQKGEQIHGYAIKTWFDWNVFVVTSLVDMYGKCKCVFEAECLFEMVADCKYNAVWSAMLAG YSHYGYGYKAIECFRNMRNEGVESNQFTFPSILRACGAVMACDFGSQVHGCIVRTGFGANIFVQSALVDMYAKCRDLNSAKRVLGNMEFDDEVSWNSLIL GCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLV TGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTAL IVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVW KALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEI IMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61170			Tetratricopeptide repeat (TPR)...		Potri.002G155100 [exp]	0	1
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	2.64	0.7159
AT1G73940			unknown protein		Potri.001G453400 [exp]	7.74	0.7148
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Potri.001G166000 [exp]	8.83	0.7116
AT4G10130			DNAJ heat shock N-terminal dom...		Potri.014G032000 [exp]	10.48	0.6705
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	15.87	0.6871
AT4G01590			unknown protein		Potri.003G047600 [exp]	16.06	0.6978
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.012G140400 [exp]	18.86	0.7104
AT3G08780			unknown protein		Potri.016G126200 [exp]	19.18	0.6500
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101600 [exp]	28.49	0.6521
AT1G33810			unknown protein		Potri.019G076400 [exp]	38.47	0.6831

Compare expression of checked genes

Potri.002G155100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.