Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61180 366 / 2e-125 RING/U-box superfamily protein (.1) AT4G11680 338 / 2e-114 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 328 / 3e-111 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 313 / 1e-104 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G68070 281 / 1e-92 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 259 / 6e-84 RIE1 RING-finger protein for embryogenesis (.1) AT4G32600 149 / 7e-41 RING/U-box superfamily protein (.1) AT1G80400 134 / 1e-35 RING/U-box superfamily protein (.1) AT5G55970 100 / 3e-23 RING/U-box superfamily protein (.1.2) AT4G26580 98 / 7e-23 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075000 [exp] 473 / 9e-168 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 342 / 7e-116 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.008G134900 [exp] 282 / 9e-93 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 267 / 5e-87 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.018G034400 [exp] 154 / 9e-43 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 152 / 7e-42 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 94 / 4e-21 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.001G371200 [exp] 93 / 4e-21 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 65 / 2e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036569 [exp] 341 / 2e-115 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10041359 [exp] 340 / 5e-115 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10006313 [exp] 308 / 6e-103 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034587 [exp] 283 / 8e-91 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 265 / 2e-85 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 250 / 1e-80 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10013144 [exp] 149 / 6e-41 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10011475 [exp] 147 / 4e-40 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10008106 [exp] 139 / 2e-37 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10023112 [exp] 130 / 7e-34 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G155200.1 pacid=42779157 polypeptide=Potri.002G155200.1.p locus=Potri.002G155200 ID=Potri.002G155200.1.v4.1 annot-version=v4.1 ATGATGCCTTCTGCAAATTCTTCACTAACATCACCACAATCCGATGCCATAGACTCATCACCACTCCTAGCCCATTCAATTGCCAACCACCTCCTCCGGA GCCGCCGCCTGTTACGCCGTCCACCACAACTCCGTGGCGCTGCCGCCCGTATCCTCCGTCGGGCGAGCAGCCGCCGAATGATGCTCCGAGAACCCTCTGT TCGTGTTCGTGAAAACGCGGCAGAGCAGCTTGAAGAGAGGCAAAGTGACTGGGGTTACTCGAAGCCGGTAGTTGTTATTGATGTTTTGTGGAGTTTGGCG ATTGTGATAATAGCTGTTGGTGTCCTGGGGTTAAGTTTGGAGGAGAAGCCAAGGGTGCCTTTCAGAGCGTGGATTGTTGCGTATATTTTGCTGTGTTCGT GTCATGTTGTCTGTGTTGTTGTTGAGTATAGAAAGAGAAGGAATTTGGGGTTAAGAGAGAGTGGGATTTTGAGTTCCGACTCAGGGGATTCGTTGGATTT CAGTACTCAACAAAGTGAAAATGATGGTCAAAATACTAGTGTTGCTAAGCGTGTGGAATCTGCAATGACGACGTTTTCAATTATATGGTGGATTATTGGA TTCTACTGGGTTACTACTGCTGGTCGCCAAAATGTGGCAAAGGATTCACCTCAGCTTTACTGGCTTTGTATTGCATTTCTTGCTGCTGACACGCTCTTTG TAATTATTTGCATTGCTGTTGCATGCCTCATTGGTATTGCTGTTTGCTGCTTCCTACCTTGTATAATCGGCATCTTATATGCTATGGCAGACCAGGAAGG AGCGACTAAAGAAGAGATTGATCGATTACTAAAATACAAGTTTCACAGGATAGGGAATTGTGAGAAAGTTAATGATGAAAGTCAAGAGTCTTTTGGTGGG ATGATGACTGAATGTGACACTGACACACCCATTGAACGTGCCCTTTCCCGTGAAGACACGGAGTGTTGCATTTGCCTTTCTGCCTATGAAGATGGAAGCG AACTACGTGAACTTCCTTGTGGTCACCATTTCCACTGTATGTGCATAGACAAGTGGCTTTGCATCAATGCAACCTGCCCTCTCTGCAAGTTCGACATTCT AAAGGCTGACAGTCAAAGTGGCAGTGAAGAAGCATAG
AA sequence Show only first row Show all	>Potri.002G155200.1 pacid=42779157 polypeptide=Potri.002G155200.1.p locus=Potri.002G155200 ID=Potri.002G155200.1.v4.1 annot-version=v4.1 MMPSANSSLTSPQSDAIDSSPLLAHSIANHLLRSRRLLRRPPQLRGAAARILRRASSRRMMLREPSVRVRENAAEQLEERQSDWGYSKPVVVIDVLWSLA IVIIAVGVLGLSLEEKPRVPFRAWIVAYILLCSCHVVCVVVEYRKRRNLGLRESGILSSDSGDSLDFSTQQSENDGQNTSVAKRVESAMTTFSIIWWIIG FYWVTTAGRQNVAKDSPQLYWLCIAFLAADTLFVIICIAVACLIGIAVCCFLPCIIGILYAMADQEGATKEEIDRLLKYKFHRIGNCEKVNDESQESFGG MMTECDTDTPIERALSREDTECCICLSAYEDGSELRELPCGHHFHCMCIDKWLCINATCPLCKFDILKADSQSGSEEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	0	1
AT4G13310		CYP71A20	"cytochrome P450, family 71, s...		Potri.003G192300 [exp]	1.73	0.8863
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	2.82	0.8783
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.014G159300 [exp]	3.16	0.8739	COP1.1
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	4.89	0.8766
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	7.14	0.8340
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	9.16	0.8635
AT1G22180			Sec14p-like phosphatidylinosit...		Potri.013G068700 [exp]	9.48	0.8230
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	11.31	0.8747	MYB165
AT2G42040			unknown protein		Potri.016G058100 [exp]	11.74	0.8297
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	12.12	0.8613

Compare expression of checked genes

Potri.002G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.