Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45770 215 / 8e-70 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT5G03940 89 / 8e-21 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G15310 67 / 3e-13 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT1G48900 62 / 1e-11 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 50 / 1e-07 Signal recognition particle, SRP54 subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078800 [exp] 229 / 2e-75 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.006G211500 [exp] 92 / 4e-22 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.016G078600 [exp] 91 / 1e-21 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 62 / 1e-11 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 58 / 3e-10 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041358 [exp] 217 / 2e-70 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 199 / 2e-62 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017023 [exp] 94 / 2e-22 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10021346 [exp] 94 / 2e-22 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10016213 [exp] 63 / 6e-12 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 63 / 6e-12 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10003676 [exp] 40 / 0.0002 AT2G45770 273 / 4e-91 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00448 [poplar] [flax] SRP54 SRP54-type protein, GTPase domain
Representative CDS sequence Show only first row Show all	>Potri.002G155400.2 pacid=42778925 polypeptide=Potri.002G155452.1.p locus=Potri.002G155400 ID=Potri.002G155400.2.v4.1 annot-version=v4.1 ATGATCAAGTTTGGTTTTTCAATCTGGAGCTGTTATGGTTTACGCTGTGTTGTCAGGAAACCGGCTGTCGCTATGATAGCTGGTGTTGATGGAGGTGGGA AGACAACATCCCTTGGAAAGCTAGCATATAGATTGAAGAAATCAGGGGAAAAGATACTGATGGCAGCAGGTGATACATTTAGGGCAGCTACCAGTGACCA GTTGGAGATGTGGACTGAAGGATCTGGGTGTCTCCACACTAATTACAGCCTCATGGATGAGTTAAAAGCATGTAAGAAAGCTGCGGGCAAAATAGTTCGT GGCGCACCTGATGTTGTTGGAATAACTGGTTTCATTTTGACAAAACTCGATGGTTCTGCTAGAGGCGGCTGTGTGGTCAGTGTAGATGACGAGCTTGGCA TCCCTGTAAAGTTCGTGGGTGTTGGAGAAGGTGTAGAAGACCTCCAACCCTTTGATGCTGAGGCTTTTGTTAACGCCATATTTTCAACGAGACGTTCATG TCGCAGATGA
AA sequence Show only first row Show all	>Potri.002G155400.2 pacid=42778925 polypeptide=Potri.002G155452.1.p locus=Potri.002G155400 ID=Potri.002G155400.2.v4.1 annot-version=v4.1 MIKFGFSIWSCYGLRCVVRKPAVAMIAGVDGGGKTTSLGKLAYRLKKSGEKILMAAGDTFRAATSDQLEMWTEGSGCLHTNYSLMDELKACKKAAGKIVR GAPDVVGITGFILTKLDGSARGGCVVSVDDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFSTRRSCRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.002G155400 [exp]	0	1
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	4.69	0.9175
					Potri.015G073051 [exp]	5.19	0.9149
AT2G47710			Adenine nucleotide alpha hydro...		Potri.008G221300 [exp]	5.91	0.9050
AT5G48630			Cyclin family protein (.1.2)		Potri.002G246800 [exp]	7.48	0.8708
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110200 [exp]	7.74	0.8909
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.001G043200 [exp]	8.24	0.8850
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	10.19	0.8970
					Potri.004G012000 [exp]	11.22	0.9058
					Potri.005G011350 [exp]	13.41	0.9111
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	14.83	0.8942

Compare expression of checked genes

Potri.002G155400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.