Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00570 903 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 712 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT5G25880 369 / 2e-120 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 353 / 1e-114 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 349 / 7e-113 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 341 / 8e-109 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G079900 [exp] 1008 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 741 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G135300 [exp] 736 / 0 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.018G046600 [exp] 362 / 6e-118 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 358 / 3e-116 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 353 / 4e-114 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 341 / 5e-109 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 339 / 5e-108 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009822 [exp] 959 / 0 AT4G00570 1028 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10040930 [exp] 938 / 0 AT4G00570 1011 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10018939 [exp] 725 / 0 AT2G13560 1081 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10028642 [exp] 723 / 0 AT2G13560 1075 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10011772 [exp] 584 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10043025 [exp] 377 / 8e-123 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 357 / 4e-116 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10025823 [exp] 346 / 1e-110 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10011125 [exp] 333 / 6e-107 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10034963 [exp] 305 / 2e-97 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [poplar] [flax] AA_dh_N PF00390 [poplar] [flax] malic Malic enzyme, N-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03949 [poplar] [flax] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G156000.2 pacid=42779176 polypeptide=Potri.002G156000.2.p locus=Potri.002G156000 ID=Potri.002G156000.2.v4.1 annot-version=v4.1 ATGTGGAGATTAGCGCGATGTGCGTCGTCGAATTTGAGCAGATCGTTGCGGAGGCGGTTTTTCTCCACGGCGGCGATTCCAGCTCCTTGTATTATTCATA AACGTGGCACTGATATTCTCCATGATCCATGGTTCAATAAGGATACAGGATTTCCTTTGACTGAAAGAGATCGACTAGGGCTGCGTGGCCTGCTTCCACC TCGTGTTATATCCTTCGAGCAGCAATATGATCGTTTTATGGAATCTTATAGGTCCCTTGAGAAGAATACCCAGGGCCAACCATACAGTGTTGTATCTTTA GCAAAATGGAGGATCTTGAATCGACTGCATGACAGGAATGAGACATTATACTACCGAGTCCTCATTGATAACATTAAAGATTTTGCTCCAATTATATACA CTCCAACAGTAGGGTTAGTATGTCAGAATTACTCAGGATTATTTAGACGCCCACGTGGAATGTATTTTAGTGCAAAGGATAAGGGAGAGATGATGTCAAT GATCTATAACTGGCCTGCTCAACAGGTTGACATGATAGTGCTTACTGATGGCAGCCGTATTCTTGGCCTAGGTGATCTTGGAGTTCAAGGAATAGGAATA CCCATTGGAAAACTAGATATGTATGTTGCTGCTGCTGGTATCAATCCACAGAAAATACTCCCAGTTATGTTAGACGTTGGTACTAACAATCAAAAGCTGC TTGAAGACCCTCTTTATTTAGGACTTAGACAACCTAGGCTGGAAGGAGAAGAGTATCTATCAATTGTTGATGAATTCATGGAAGCTGTTCATACTCGCTG GCCCAAAGCCATTGTACAGTTTGAAGACTTTCAGATGAAGTGGGCGTTTGAAACACTGCAAAGATATCGTAAGAGGTTTTGCATGTTTAATGATGACATA CAGGGAACTGCTGGTGTTGCTCTTGCGGGGTTACTGGGAACAGTGAGAGCCCAAGGCCTACCATTATCTGACTTTGTTAACCAAAAGATAGTCGTGGTGG GTGCTGGGAGCGCAGGGCTTGGTGTCCTAAACATGGCAATACAGGCTCTTTCAAGAATGTCTGGGAACAATGAAATGGCTGCAAAGAATAAATGTTATCT ACTTGATAAAGATGGCCTCATTACAAAAGAGAGGAAAAATATTGATCCAGCTGCGGCACCATTTGCTAAAGACTTGAAAGATGTTGAAGGGCTTAGGGAG GGAGCTAGTCCATTTGAAGTGGTTAAAAAGCTGAAGCCCCATGTGCTTCTTGGTTTGTCTGGGGTTGGGGGGGTCTTTAATGAAGAGGTGCTCAAGGCCA TGCGAGAATCAGATTCAACTAAACCGGCTATTTTTGCTATGTCAAACCCCACAATGAATGCTGAATGCACTGCTGCTGATGCTTTCAAGTATGCCGGACC AAATATAATTTTTGGAAGTGGAAGCCCATTTGAAGATGTTGATCTAGGAAATGGAAAAGTAGGACATGTAAATCAAGCAAATAATATGTACCTGTTTCCT GGGATTGGTTTGGGAACTCTTCTCTCAGGTGCGCACATTATAACTGATGGAATGTTGCAAGCAGCTGCTGAATGCCTCGCTTCATACATGACGGATGAAG AAATCCAAAACGGCATTTTGTATCCATCTATTGATAGTATACGACATATTACAGCAGAGGTAGGAGCTGCTGTTCTGCGAGCGGCAGTTGAAGAAGACCT GGCAGAAGGACATGGTGAGGCAGGCCCCCGGGAGCTCAAGCACATGTCAAAAGCGGAGACAGTAGCATATGTGTCACGGAATATGTGGTTCCCTGTTTAC AGCCCTCTTGTTCATGAGAAATAG
AA sequence Show only first row Show all	>Potri.002G156000.2 pacid=42779176 polypeptide=Potri.002G156000.2.p locus=Potri.002G156000 ID=Potri.002G156000.2.v4.1 annot-version=v4.1 MWRLARCASSNLSRSLRRRFFSTAAIPAPCIIHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMESYRSLEKNTQGQPYSVVSL AKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGI PIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLSIVDEFMEAVHTRWPKAIVQFEDFQMKWAFETLQRYRKRFCMFNDDI QGTAGVALAGLLGTVRAQGLPLSDFVNQKIVVVGAGSAGLGVLNMAIQALSRMSGNNEMAAKNKCYLLDKDGLITKERKNIDPAAAPFAKDLKDVEGLRE GASPFEVVKKLKPHVLLGLSGVGGVFNEEVLKAMRESDSTKPAIFAMSNPTMNAECTAADAFKYAGPNIIFGSGSPFEDVDLGNGKVGHVNQANNMYLFP GIGLGTLLSGAHIITDGMLQAAAECLASYMTDEEIQNGILYPSIDSIRHITAEVGAAVLRAAVEEDLAEGHGEAGPRELKHMSKAETVAYVSRNMWFPVY SPLVHEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.002G156000 [exp]	0	1
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	4.00	0.7630
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	11.13	0.7728
					Potri.001G422000 [exp]	17.60	0.7516
AT4G38040			Exostosin family protein (.1)		Potri.015G087900 [exp]	24.89	0.7187
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	32.86	0.7275
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Potri.003G131600 [exp]	33.57	0.7286
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Potri.014G165400 [exp]	44.47	0.7078	Pt-ATVPS11.1
AT5G49110			unknown protein		Potri.010G011800 [exp]	45.72	0.7358
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	62.40	0.7318
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	73.71	0.7239

Compare expression of checked genes

Potri.002G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.