Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09970 466 / 1e-166 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G09960 443 / 2e-157 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 46 / 7e-06 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G19980 45 / 4e-05 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G64040 44 / 0.0001 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT1G03445 44 / 0.0001 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT3G58500 43 / 0.0002 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT3G46820 43 / 0.0002 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G50370 43 / 0.0002 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 42 / 0.0003 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156500 [exp] 679 / 0 AT3G09970 478 / 4e-171 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.008G003200 [exp] 45 / 2e-05 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G215700 [exp] 46 / 3e-05 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.010G254500 [exp] 45 / 3e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G098600 [exp] 45 / 3e-05 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.009G016900 [exp] 46 / 4e-05 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.001G245700 [exp] 44 / 0.0001 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.013G045900 [exp] 43 / 0.0002 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G196600 [exp] 43 / 0.0003 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014383 [exp] 479 / 9e-172 AT3G09970 474 / 2e-170 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 46 / 2e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 46 / 2e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10021872 [exp] 46 / 2e-05 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10008369 [exp] 46 / 4e-05 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 46 / 4e-05 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 46 / 4e-05 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10015192 [exp] 45 / 4e-05 AT3G05580 412 / 1e-144 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10013456 [exp] 45 / 4e-05 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10011827 [exp] 45 / 4e-05 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.002G156200.1 pacid=42777171 polypeptide=Potri.002G156200.1.p locus=Potri.002G156200 ID=Potri.002G156200.1.v4.1 annot-version=v4.1 ATGTACCCAAAAGCATTCTCTTTATCAATCGAAGGACAGAACAGAACCACCACGGAACCCAAAATGACAGAGGCAGAGCCAAGCAACAACAGCACGGTCG CAAAACCCAGATTAGTAATCTGCATAGGCGACATCCATGGCCACATCACAAAGCTTCAAAATCTTTGGTCAAATCTCGAAACCCAATTCGACCCCCAACA CTTTAACGCTGCAACAATTATCTTCTTAGGCGATTACTGTGACAGAGGCCCAGATACCAAGAAAGTCCTAGATTTCTTGATAGACTTACCTTCAAGGTAT CCAAATCAAAAGCATGTGTTTCTTTCGGGAAATCATGACTTTGCTTTTGCTGCTTTTGTTGGTGTCCTGCCTGAACCGCAAAATGGGGTGTCATTTAAGG AAGGATGGGAGGAGTATGAAGAGAGTGAGGACAGGGAAGGGTGGTATAAAGGAGACGGGTATGAGAATATGCATTTGGAAGGGAGAAGGTGGGCTGGTCA TATTAAGGTGGGATTCAATACCATTAAAGGGACTGAATGTAAGGGCTCTATTTATGATGCTGGTCCCACTTTCACTTCTTATGGTGTCCCTCATGGATCT TCTGACTTATTGAAGGCAGTTCCTGATGATCACAAGAAGTTTCTAGCTGATACGGTTTGGGTCCATGAAGAGGATGATGTGTGCATAGAGGATGAAGAAG GAATTAGACACTGTAAATTGATTGCCGCGCATGCTGGTTTAGAGGAAGGGAAAAATGTAGGCGAACAACTGAGATTTTTGAAAGCTAAGGAGACTCATGT CCCCAAGATAGAGGCTCTAAGTGGGAGGAAAACAGTTTGGGATATACCAAAGGAATTAACTGAGAAACCGACCATTGTGGTTAGCGGCCACCACGGGAAA CTTCATATTGAAGGTCTAAGATTGATTATTGATGAAAGTGGTGGATTTGAGAATAAACCATTGGCTGCAATTGCGCTTCCCTCGATGAAGCTTGTTCGTG ATACTGATAATTTGACAAAATAG
AA sequence Show only first row Show all	>Potri.002G156200.1 pacid=42777171 polypeptide=Potri.002G156200.1.p locus=Potri.002G156200 ID=Potri.002G156200.1.v4.1 annot-version=v4.1 MYPKAFSLSIEGQNRTTTEPKMTEAEPSNNSTVAKPRLVICIGDIHGHITKLQNLWSNLETQFDPQHFNAATIIFLGDYCDRGPDTKKVLDFLIDLPSRY PNQKHVFLSGNHDFAFAAFVGVLPEPQNGVSFKEGWEEYEESEDREGWYKGDGYENMHLEGRRWAGHIKVGFNTIKGTECKGSIYDAGPTFTSYGVPHGS SDLLKAVPDDHKKFLADTVWVHEEDDVCIEDEEGIRHCKLIAAHAGLEEGKNVGEQLRFLKAKETHVPKIEALSGRKTVWDIPKELTEKPTIVVSGHHGK LHIEGLRLIIDESGGFENKPLAAIALPSMKLVRDTDNLTK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	0	1
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	1.00	0.8998
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.019G010200 [exp]	4.00	0.8530
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Potri.018G104900 [exp]	5.74	0.8385	Pt-SKIP1.1
					Potri.009G149000 [exp]	6.48	0.8582
					Potri.017G027900 [exp]	7.74	0.8815
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	10.39	0.8269
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	11.31	0.8415
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.011G168500 [exp]	11.66	0.8271
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	16.12	0.7976
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	17.32	0.7983

Compare expression of checked genes

Potri.002G156200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.