Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09970 478 / 5e-171 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G09960 453 / 2e-161 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 45 / 2e-05 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G19980 44 / 0.0001 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G03445 43 / 0.0003 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT1G64040 42 / 0.0003 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT3G46820 42 / 0.0003 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT3G58500 42 / 0.0004 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G50370 42 / 0.0005 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 41 / 0.0008 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156200 [exp] 650 / 0 AT3G09970 467 / 9e-167 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G098600 [exp] 45 / 3e-05 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G215700 [exp] 45 / 6e-05 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 45 / 8e-05 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.008G003200 [exp] 44 / 0.0001 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 44 / 0.0001 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.013G045900 [exp] 42 / 0.0003 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 42 / 0.0004 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G196600 [exp] 42 / 0.0005 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014383 [exp] 489 / 1e-175 AT3G09970 474 / 2e-170 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031489 [exp] 46 / 3e-05 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10021872 [exp] 45 / 3e-05 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 45 / 4e-05 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10015192 [exp] 45 / 5e-05 AT3G05580 412 / 1e-144 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 44 / 8e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 44 / 8e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10004100 [exp] 45 / 9e-05 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 45 / 9e-05 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 45 / 0.0001 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.002G156500.1 pacid=42779570 polypeptide=Potri.002G156500.1.p locus=Potri.002G156500 ID=Potri.002G156500.1.v4.1 annot-version=v4.1 ATGTACTCAAAAGCATTCTCTTTATCAATCGAAGGACAGAACAGAACCACCACGGAACCCAAAATGACAGAGGCAGAGCCAAGCAACAACAGCACGCTCG CAAAACCCAGATTAGTAATCTGCATAGGCGACATCCATGGCTACATCACAAAGCTTCAAAATCTTTGGTCAAATCTCGAAACCCAATTCGACCCCCAACA CTTTAACGCTGCAACAATTATCTTCTTAGGCGATTACTGTGACAGAGGCCCAGATACCAAGAAAGTCCTAGATTTCTTGATAGACTTACCTTCAAGGTAT CCAAATCAAAAGCATGTGTTTCTTTCGGGAAATCATGACTTTGCTTTTGCTGCTTTTGTTGGTGTCCTGCCTGAACCGCAAAATGGGGTGTCATTTAAGG AAGGATGGAAGGAGTATGAAGAGAGTGAGGACAGGGAAGGGTGGTATAAAGGAGACGGGTATGAGAATATGCATTTGCAAGGGAGAAGGTGGGCTGGTCA TATTAAGGTGAGATTCAATACCAGTAAAGGGATTGAATATAAGGGCTCTATTTATGATGCTGGTCCCACTTTCACTTCCTATGGTGTCCCTCATGGATCT TCTGACTTATTGAAGGCAGTTCCTGATGATCACAAGAAGTTTCTAGCTGACACGGTTTGGGTCCATGAAGAGGATGATGTGTGCATAGAGGATGAAGAAG GAATTAGACACTGTAAATTGATTGCCGCGCATGCTGGTTTAGAGGAAGGGAAAAATGTAGGCGAACAACTGAGATTTTTGAAAGCTAAGGAGACTCATGT CCCCAAGATAGAGGCTCTTAGTGGGAGGAAAACAGTTTGGGATATACCAAAGGAATTAACTGAGAAACCGATCATTGTGGTTAGCGGCCACCACGGGAAA CTTCATATTGATGGTCTTAGATTGATTATTGATGAAGGTGGTGGATTTGAGAATAAACCAGTGGCTGCAATTGCGCTTCCCTCGATGAAGCTTGTTCGTG ATACTGATAATTTGACAAAATAG
AA sequence Show only first row Show all	>Potri.002G156500.1 pacid=42779570 polypeptide=Potri.002G156500.1.p locus=Potri.002G156500 ID=Potri.002G156500.1.v4.1 annot-version=v4.1 MYSKAFSLSIEGQNRTTTEPKMTEAEPSNNSTLAKPRLVICIGDIHGYITKLQNLWSNLETQFDPQHFNAATIIFLGDYCDRGPDTKKVLDFLIDLPSRY PNQKHVFLSGNHDFAFAAFVGVLPEPQNGVSFKEGWKEYEESEDREGWYKGDGYENMHLQGRRWAGHIKVRFNTSKGIEYKGSIYDAGPTFTSYGVPHGS SDLLKAVPDDHKKFLADTVWVHEEDDVCIEDEEGIRHCKLIAAHAGLEEGKNVGEQLRFLKAKETHVPKIEALSGRKTVWDIPKELTEKPIIVVSGHHGK LHIDGLRLIIDEGGGFENKPVAAIALPSMKLVRDTDNLTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156500 [exp]	0	1
AT1G80570			RNI-like superfamily protein (...		Potri.017G053400 [exp]	1.00	0.8742
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G121100 [exp]	17.43	0.8682
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	26.45	0.8559
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.009G117500 [exp]	52.00	0.8285	RD2.1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.008G007000 [exp]	74.75	0.8467
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	95.14	0.8101
AT5G04250			Cysteine proteinases superfami...		Potri.008G036900 [exp]	105.65	0.8364
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	126.94	0.8328	Pt-IFS1.51
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.010G149900 [exp]	180.91	0.8181
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.010G011900 [exp]	192.33	0.8128	Pt-MFP2.2

Compare expression of checked genes

Potri.002G156500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.