Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01800 207 / 4e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 207 / 1e-66 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 203 / 2e-65 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 110 / 5e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 105 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 90 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156800 [exp] 240 / 1e-79 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 238 / 5e-79 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156750 [exp] 233 / 7e-79 AT1G01800 165 / 1e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 236 / 4e-78 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 233 / 8e-77 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 229 / 2e-75 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 219 / 2e-71 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 175 / 5e-54 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 156 / 6e-47 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040933 [exp] 207 / 7e-67 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 208 / 9e-67 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 202 / 1e-64 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 201 / 2e-64 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 200 / 5e-64 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 202 / 7e-62 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 191 / 3e-60 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 186 / 2e-58 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 184 / 1e-57 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 162 / 4e-49 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G156866.1 pacid=42777786 polypeptide=Potri.002G156866.1.p locus=Potri.002G156866 ID=Potri.002G156866.1.v4.1 annot-version=v4.1 ATGCAAGTGAACAATGCAGCGATCCGTGGAACCACAATAGACTCGGACGCTTCAGCAGCTTCAAAAATTACTGGTACAGAAGACGATTTGCAGAATGTTT GGAAGAAGGTATCGATTCAAAATTATGAGTTAGCAGAAGAGTGCCTGAACACAAACTGCTGCGGTGCTAAAAGAACAGCTGAAGCTCTTATTCCGCTCCT CCAGCTATCCGACTCTCCAAGGATTGTCAATGTTTCTTCCTTCTTGTCAATGCTGAAGAATATACCAAATGAATGGGCTAAAGGAGTGTTCAGTGATGTT GATACCTTTACAGAGGAGAGAATAGATGAACTATTAAGTGTATTTCTAAAAGATTTCAAGGAGGATTCTTTAGAAACCAAGGGCTGGCCAGCCTCACTGT CAGCCTATGCACTCTCAAAAGCAGCCATGAATGCTCACACAAGGATTGTAGCCAAGAAGCACCCCAATTTCTGCATTAATTGCATCTGTCCAGGGTTTGT CAAAACAGATATGAGCAATAACACCGGCACCTTATCGGTTGATGAAGCTGCAGTGTATCCTGTGAAATTGGCGCTGCTTCCTGATGGAGGACCTTCTGGC CTCTTTTTCATTCTGGATAAATTATCTTGTTTCTGA
AA sequence Show only first row Show all	>Potri.002G156866.1 pacid=42777786 polypeptide=Potri.002G156866.1.p locus=Potri.002G156866 ID=Potri.002G156866.1.v4.1 annot-version=v4.1 MQVNNAAIRGTTIDSDASAASKITGTEDDLQNVWKKVSIQNYELAEECLNTNCCGAKRTAEALIPLLQLSDSPRIVNVSSFLSMLKNIPNEWAKGVFSDV DTFTEERIDELLSVFLKDFKEDSLETKGWPASLSAYALSKAAMNAHTRIVAKKHPNFCINCICPGFVKTDMSNNTGTLSVDEAAVYPVKLALLPDGGPSG LFFILDKLSCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01800			NAD(P)-binding Rossmann-fold s...		Potri.002G156866 [exp]	0	1
AT3G09925			Pollen Ole e 1 allergen and ex...		Potri.006G119100 [exp]	7.21	0.9831
AT1G55200			Protein kinase protein with ad...		Potri.014G146500 [exp]	7.61	0.9701
AT1G01800			NAD(P)-binding Rossmann-fold s...		Potri.002G156750 [exp]	8.48	0.9892
AT2G04100			MATE efflux family protein (.1...		Potri.017G120500 [exp]	12.00	0.9878
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	17.49	0.9871
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075800 [exp]	17.54	0.9868
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	20.00	0.9866	GY4.2
					Potri.009G020201 [exp]	21.63	0.9864
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G076000 [exp]	21.90	0.9481
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	23.30	0.9041

Compare expression of checked genes

Potri.002G156866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.