Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01790 1343 / 0 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 1335 / 0 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT4G04850 284 / 2e-81 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT5G11800 101 / 8e-22 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT5G51710 89 / 5e-18 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT2G19600 83 / 5e-16 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080800 [exp] 1947 / 0 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 263 / 5e-74 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.015G132400 [exp] 126 / 9e-30 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 124 / 6e-29 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.018G054100 [exp] 79 / 1e-14 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.006G230400 [exp] 79 / 2e-14 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018844 [exp] 1351 / 0 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 724 / 0 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10009830 [exp] 692 / 0 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 613 / 0 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 364 / 5e-117 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 263 / 4e-75 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 206 / 1e-56 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10031106 [exp] 84 / 2e-16 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 84 / 4e-16 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020484 [exp] 77 / 3e-15 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family CL0063 [poplar] [flax] NADP_Rossmann PF02254 [poplar] [flax] TrkA_N TrkA-N domain
Representative CDS sequence Show only first row Show all	>Potri.002G157200.1 pacid=42779795 polypeptide=Potri.002G157200.1.p locus=Potri.002G157200 ID=Potri.002G157200.1.v4.1 annot-version=v4.1 ATGGAGTTTGCGTGCAATATTCAGCAGACGAATGCATTTTATAGCAGACAAGGTACTAGTTGTAGGGTATCAAATAGGTTATATTCGAGATTTAGACATA AAAGTTATGGGTATAATGCTGGTGATTTGAAGATTGTTTCGAGAGAAAGACCTTCAAAGACATTAAAGAAAAGTGTTTTATATGGTAGTGGAAGTGGAAT GCGTAGTCATTTGCTTGTTGGTGGTTATGCAAGTAATCCGTTGTTTTGCAATTTTATTGATGGGTTTGAGGGATTGAGAAGTGTTAAGTTGCGGTGTCAA GGTAATGATTCGTTAACATATATTGATGGGAATGGTAGAAATGTAGAAATTGGTAAGGGTAATGATAAGAACTTGAGAGCAGGGTCTAATGGTGGCTTGG GAGAAGAGGATGGAAGAGGAGAAAAGGTAATGGAGACTGAAATGGCGGCAGAGGCACTTAGTTTGGATGAATTGAGGGAATTGTTACAGAAAGCAATGAG GGAATTGGAGGTTGCACGGCTTAATAGTACCATGTTCGAGGAAAAGGCACAGAGTATATCAGAAACTGCAATAGCTTTGCAAGATGAGGCATCGAGTGCT TGGAATGATGTTAACTCAACACTTGATATGATTCAGGACATTGTGAACAAGGAGGGTGTTGCTAAAGAAGCTTTTCAAAAGGCAACTATGGCGCTTTCTT TGGCTGAGGCAAGGCTTAAGGTGGCAGTGGAGTCGATAAAATCTACGAAAGAAGGGGTTGATTCATTGGAGGGTTCTGGAGAGAGTGATGTGCAAAATGA TAATAAGGAAGATTACGAGACAATTTTGGCTGCTCAGAATGATATTAGGGAATGCCAGGCAAATTTGGCAAATTGTGAAGCAGAGCTGAGGCGCTTGCAA AGTATAAAGGAAGAATTACAAAAGGAGGTAGACGTGTTGAATGAGAAAGCAGAGAAAGCACAAATGAATGCTTTGAAAGCAGAGGAGGATGTTGCAAACA TTATGCTTCTAGCAGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACCCAACGAGTGAGTGATGCAGAAATTGCGTTACAAAAGGCAGAGAAATCTCTCTC TAGTTCTCATGTTGATATCCAGCAAACAGCTCGGGGATATGTGTCTGGTGATGAGGCAGTAGTCGAGGAGGAGAAGATGCGCGGAGGCAGTCTTTCCGAT GTTGAGAAAGAAACAGATATGACTGTAAATGGTGATGTTTTAGTTGGCGAGCCTTCAATAGATAGACTATCTGATAAAACCAGCCCGAGTTCTGAAGAGT TATATCTTTCTGATTATTCTAGTGACCACGAGAATGGAAAATCGAGTTTGCACTCTATTAAAGATACTGAAGCAGAAGCTGAAAAGTCAAAAGGTGGCAT TCAGACAAAAAAGCAGGAATTACAGAAGGACCTGACCAGGGAGAGTTCATCTTCACCTCTCAGTGCTCCCAAGGCGTTGTTGAAGAAATCCTCTCGTTTC TTTTCTGCATCCTTCTTCTCTTTCAGTGGAGATGAGACGGAGTTGACAGCAGCATCAGTTTTTCAGGGCTTAATGGAGCCTGCAAGGAAGCAACTGCCCA AATTTCTTCTTGGCCTATTGTTGTTTGGAGCAGGATTTGCCTTCTACTCTAATCGAGTGGAGAAGAGTACCCAGATGCTTCAAAAACCAGAAGTGGTCAC CACAAGCATTGAAGAAGTTTCATCAAATGCAAAGCCTCTGATTCAACATATTCAGAAACTCCCAAAGAGAGTCAAAAAACTAATTGCAATGCTTCCTCAT CAAGAGATGAATGAGGAGGAAGCATCTCTCTTTGATGTTTTGTGGTTGCTGCTTGCTAGTGTTATTTTTGTGCCTTTATTTCAGAAAATTCCAGGAGGCA GTCCTGTTCTTGGATACTTGGCTGCTGGCATCTTGATTGGTCCTTATGGTCTCTCCATCATCCGTCATGTGCTTGGTACAAAAGCGATTGCTGAATTTGG AGTTGTTTTCTTGCTATTCAATATTGGCCTTGAGCTCTCTGTTGAAAGGCTTAGTTCCATGAAAAAATATGTTTTTGGATTAGGCTCTGCTCAGGTCTTG GTGACAGCAGTGGTTATTGGCTTGGTCACACATTTTGTTTCCAGGCTGCCTGGTCCTGCTGCAATTGTCATTGGAAATGGCCTGGCACTATCTTCTACTG CTGTTGTTCTACAGGTGTTGCAGGAGCGAGGTGAGAGCACATCACGCCATGGACGTGCTACTTTCTCTGTCCTACTATTCCAGGATTTGGCTGTTGTGGT GTTGCTAATACTCATTCCACTTATTTCACCAAATTCATCCAAAGGAGGGGTTGGTTTTCAAGCAATTGCTGAGGCTCTTGGGTTGGCTGCTGTTAAGGCA GCAGTTGCCATCACCGCGATAATTGCTGGTGGAAGATTGCTGCTTCGACCAATTTATAAACAAATTGCAGAAAATCAAAATGCAGAGATATTCTCAGCCA ATACACTTCTTGTTATTCTGGGGACCAGTCTCCTTACTGCCAGGGCTGGACTTTCCATGGCACTGGGGGCATTTCTGGCTGGTTTGCTTCTTGCAGAAAC CGAATTTTCCTTGCAGGTTGAATCAGATATTGCTCCATATCGCGGGCTTCTATTGGGCCTTTTTTTCATGACGGTTGGAATGTCCATTGACCCAAAGCTT CTGGTTTCAAATTTTCCTGCCATTATGGGATCATTAGGGCTTTTAATTGGAGGCAAGACTGTGTTGGTTGCTTTAGTTGGCAGGTTTTTTGGTATTTCTA TTATATCTGCAATAAGGATTGGTCTTCTTCTTGCTCCGGGTGGAGAATTTGCATTTGTAGCATTTGGTGAAGCTGTTAACCAGGGTATAATGTCTCCTCA GCTATCCTCTTTATTGTTTCTTGTGGTGGGGATCTCAATGGCCCTCACACCATGGCTGGCTGCTGGCGGCCAGTTAATAGCCTCTCGCTTTGAGCAGCAT GATGTTCGTAGTTTGTTACCGGTTGAGAGTGAGACAGATGATTTGCAGGATCATATTATTATCTGTGGATTTGGACGTGTTGGCCAGATTATAGCACAGC TTCTCTCAGAACGATTAATTCCATTTGTTGCTCTTGACGTGAGTAGCGATAGAGTGGCAGCAGGCCGTGCCCTGGATCTTCCCGTGTACTTTGGAGATGC TGGTAGTCGAGAGGTCCTCCATAAAGTCGGTGCTGAAAGAGCATGTGCTGCTGCAATAACTCTAGATACACCTGGTGCAAATTATAGAACTGTCTGGGCT CTGAGCAAGTACTTTCCCAATGTGAAGACGTTTGTTCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAGAAGGCTGGGGCTACAGCTGTTGTACCTG AGACATTGGAACCAAGTCTACAGTTGGCAGCTGCTGTTCTTGCGCAGGCTAAACTGCCCATGTCAGAGATTGCAGCAACCATCAATGCATTTAGATCCCG CCACTTGTCTGAGCTTACTGAGCTATGCGAAACTAGTGGAAGTTCTCTCGGATATGGATTTTCTCGTGTCATGACTAAACCCAAAAGTCAGTCCTTGGAT TCTTCAGATGAAAACCAATTCAGTGAAGGAACATTAGCAATATGA
AA sequence Show only first row Show all	>Potri.002G157200.1 pacid=42779795 polypeptide=Potri.002G157200.1.p locus=Potri.002G157200 ID=Potri.002G157200.1.v4.1 annot-version=v4.1 MEFACNIQQTNAFYSRQGTSCRVSNRLYSRFRHKSYGYNAGDLKIVSRERPSKTLKKSVLYGSGSGMRSHLLVGGYASNPLFCNFIDGFEGLRSVKLRCQ GNDSLTYIDGNGRNVEIGKGNDKNLRAGSNGGLGEEDGRGEKVMETEMAAEALSLDELRELLQKAMRELEVARLNSTMFEEKAQSISETAIALQDEASSA WNDVNSTLDMIQDIVNKEGVAKEAFQKATMALSLAEARLKVAVESIKSTKEGVDSLEGSGESDVQNDNKEDYETILAAQNDIRECQANLANCEAELRRLQ SIKEELQKEVDVLNEKAEKAQMNALKAEEDVANIMLLAEQAVAFELEATQRVSDAEIALQKAEKSLSSSHVDIQQTARGYVSGDEAVVEEEKMRGGSLSD VEKETDMTVNGDVLVGEPSIDRLSDKTSPSSEELYLSDYSSDHENGKSSLHSIKDTEAEAEKSKGGIQTKKQELQKDLTRESSSSPLSAPKALLKKSSRF FSASFFSFSGDETELTAASVFQGLMEPARKQLPKFLLGLLLFGAGFAFYSNRVEKSTQMLQKPEVVTTSIEEVSSNAKPLIQHIQKLPKRVKKLIAMLPH QEMNEEEASLFDVLWLLLASVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVLGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL VTAVVIGLVTHFVSRLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKA AVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKL LVSNFPAIMGSLGLLIGGKTVLVALVGRFFGISIISAIRIGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQH DVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVSSDRVAAGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWA LSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINAFRSRHLSELTELCETSGSSLGYGFSRVMTKPKSQSLD SSDENQFSEGTLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.002G157200 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	2.00	0.8759
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.013G065700 [exp]	7.07	0.8623
AT5G62270			unknown protein		Potri.017G017901 [exp]	8.94	0.8390
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	9.32	0.8747
AT1G53250			unknown protein		Potri.011G112300 [exp]	10.72	0.8731
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.002G234500 [exp]	13.41	0.8472
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	14.28	0.8717	XTH2.2
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	14.73	0.8692
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.015G079300 [exp]	16.94	0.8357
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	21.21	0.8659

Compare expression of checked genes

Potri.002G157200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.