Plant FIBer expression Database

Potri.002G157400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01770 843 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014782
[exp]
842 / 0 AT1G01770 822 / 0.0 unknown protein
Lus10036349
[exp]
307 / 3e-98 AT1G01770 285 / 5e-90 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07287 AtuA Acyclic terpene utilisation family protein AtuA
Representative CDS sequence
>Potri.002G157400.1 pacid=42776811 polypeptide=Potri.002G157400.1.p locus=Potri.002G157400 ID=Potri.002G157400.1.v4.1 annot-version=v4.1
ATGGAAGAAGATCAAGACGGGAATGAAATTCACAATTGCGTGATCAAACTGAGAGAGAAACCAAAAAAACGTAGAGAGAAGGTGTACATAGGCTGCGGAG
CAGGATTTGGCGGCGACAGACCAATCGCAGCGCTTAAATTACTCCAAAGAGTCAAAGAGCTAAACTACATAGTTCTTGAATGCTTAGCCGAGCGAACTCT
AGCTGATCGTTATCAGATAATGATTTCTGGTGGCGACGGTTATGATTCTCGCATTACGGATTGGATGCGATTGTTACTGCCTTTGGCTGTGGAGAGAGGG
ACTTGTATAATCACCAATATGGGTGCAATGGATCCGGTTGGTGCACAAGAGAAGGTTGTAGAATTAGCTAGTAGTTTGGGGCTTGGCGTTTCTGTTGCTG
TGGCTCATGAGGTTTCTTCTGCTAAATTAGGTTCAGGATCGTCGACCAAGAAGTCCTATATTATGGAAGGTGGTATTAGCACTTATCTTGGAGCAGCTCC
TATTGTTGAATGTTTGGAGAAATATCAACCAGATGTTGTCATTACTTCACGGGTTGCCGATGCTGCCTTGTTTTTAGCTCCGATGGTTTATGAACTAGGT
TGGAATTGGAATGACTTAGAGGAGCTAGCACAAGGATCTATGGCTGGCCACCTCCTGGAGTGTGGTTGTCAACTCACAGGGGGATACTTCATGCATCCAG
GTGATAAATACCGAGACATTTCTTTTCCTTCTCTCCTAGACTTGTCACTTCCTTATGCAGAAATAAGTTTCGATGGAAGCCTTTGTGTAGCAAAAGCAGA
GGGTAGTGGTGGGGTGTTAAATTTTAGTACTTGTGCTCAACAACTTCTCTATGAGGTTGGGGATCCAGGTGCTTATATTACCCCTGATGTGGTAATTGAT
TTCCGGAATGTTTCATTTCACTCACTGTCAGCTCATAAAGTTCTCTGTGCTGGAGCTAAACCATCTGTTAATTCAGTACCGGATGAACTCTTGCGCTTGA
TTCCAAAGGATTGTGGATGGAAAGGATGGGGAGAGATATCTTATGGAGGGTATGAGTGTGTAAAACGTGCTAAAGCCGCTGAATATCTGGTCAGGTCATG
GATGGAAGAAGTATTTCCTGGTGTTAGCTGTAATGTTGCTTCATATATTATTGGACTTGATAGCCTGAAGACAATTAGCATTCATGATAACAATATATCA
TGTGGTGCTTGTGAAGATATAAGGTTACGTATGGATGGACTATTTGAGTTGAAGGAGCATGCAGTCCAATTTGAAACAGAATTTACGGCTTTATATACAA
ATGGCCCAGCTGGTGGTGGTGGTGTCAGCACTGGACACAAGAAAGAGATAATTCTCGGAAAGCAATTGGTTGAGCGTGAAAGTGTTTTCTGGCGGACTGG
AGTAAAGAGCTGGAAGGGAATGCGTCCAAATAAGGAAGAAGTTGACCTTGGAAATTTAGTGAAAACCACTATTTGGCACGACCCTTTATCACCACCTCAT
CCAAAAAGTTCTTCACCAGTAATCGAGACCTCTCCCGCTCCATCTGGCCAGAAGATTCCTCTTTATTCTGTAGCTCATAGCAGAGTTGGAGACAAAGGAA
ATGACATGAATTTTTCAATCATCCCGCACTTCCCCTCCGATATTGAGAGGCTGAAGCTAATTATAACACCCCAGTGGGTGAAGGAAGTTGTCTCAACTCT
TCTAAACACCTCTTCTTTTCCTGACTCGGTTTCCACAATGAAGAGAGACAAATGGGTGAGTGAACATGTTAATGTAGAAATTTATGAAGTCAAGGGAATC
AAGTCTTTGAATATTGTGGTCCGGAACATTCTAGATGGCGGCGTCAACTGCTCCCGTAGGATCGACCGGCATGGAAAGACCATCTCAGATCTTATATTGT
GTCAGAAAGTTGTGTTGCTTCCATGA
AA sequence
>Potri.002G157400.1 pacid=42776811 polypeptide=Potri.002G157400.1.p locus=Potri.002G157400 ID=Potri.002G157400.1.v4.1 annot-version=v4.1
MEEDQDGNEIHNCVIKLREKPKKRREKVYIGCGAGFGGDRPIAALKLLQRVKELNYIVLECLAERTLADRYQIMISGGDGYDSRITDWMRLLLPLAVERG
TCIITNMGAMDPVGAQEKVVELASSLGLGVSVAVAHEVSSAKLGSGSSTKKSYIMEGGISTYLGAAPIVECLEKYQPDVVITSRVADAALFLAPMVYELG
WNWNDLEELAQGSMAGHLLECGCQLTGGYFMHPGDKYRDISFPSLLDLSLPYAEISFDGSLCVAKAEGSGGVLNFSTCAQQLLYEVGDPGAYITPDVVID
FRNVSFHSLSAHKVLCAGAKPSVNSVPDELLRLIPKDCGWKGWGEISYGGYECVKRAKAAEYLVRSWMEEVFPGVSCNVASYIIGLDSLKTISIHDNNIS
CGACEDIRLRMDGLFELKEHAVQFETEFTALYTNGPAGGGGVSTGHKKEIILGKQLVERESVFWRTGVKSWKGMRPNKEEVDLGNLVKTTIWHDPLSPPH
PKSSSPVIETSPAPSGQKIPLYSVAHSRVGDKGNDMNFSIIPHFPSDIERLKLIITPQWVKEVVSTLLNTSSFPDSVSTMKRDKWVSEHVNVEIYEVKGI
KSLNIVVRNILDGGVNCSRRIDRHGKTISDLILCQKVVLLP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01770 unknown protein Potri.002G157400
[exp]
0 1
AT4G36400 D2HGDH D-2-hydroxyglutarate dehydroge... Potri.007G018600
[exp]
1.00 0.7386
AT2G26800 Aldolase superfamily protein (... Potri.006G036800
[exp]
3.16 0.6557
AT3G61700 Plant protein 1589 of unknown ... Potri.015G019500
[exp]
4.47 0.6576
AT1G16010 AtMRS2-1, AtMGT... magnesium transporter 2 (.1.2.... Potri.003G183600
[exp]
10.48 0.6013
AT4G23270 CRK19 cysteine-rich RLK (RECEPTOR-li... Potri.011G035850
[exp]
26.94 0.6667
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Potri.008G216800
[exp]
39.71 0.5807
AT4G09900 ATMES12 ARABIDOPSIS THALIANA METHYL ES... Potri.013G104700
[exp]
85.78 0.5621
AT3G21280 UBP7 ubiquitin-specific protease 7 ... Potri.001G197400
[exp]
89.19 0.5002 UBP6.2
AT3G61350 SKIP4 SKP1 interacting partner 4 (.1... Potri.014G083200
[exp]
107.47 0.5016 Pt-SKIP4.1
AT2G43210 Ubiquitin-like superfamily pro... Potri.007G123800
[exp]
120.91 0.5419

Potri.002G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.