Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00660 817 / 0 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 779 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 755 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G19760 295 / 1e-95 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 290 / 2e-93 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G51380 286 / 4e-92 DEA(D/H)-box RNA helicase family protein (.1) AT1G72730 286 / 6e-92 DEA(D/H)-box RNA helicase family protein (.1) AT1G54270 282 / 2e-90 EIF4A-2 eif4a-2 (.1.2) AT5G11200 264 / 3e-83 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 264 / 3e-83 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081100 [exp] 904 / 0 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.007G070000 [exp] 297 / 2e-96 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G093900 [exp] 297 / 3e-96 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 285 / 1e-91 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 285 / 2e-91 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 285 / 2e-91 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 283 / 1e-90 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G253100 [exp] 262 / 1e-82 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 262 / 2e-82 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014783 [exp] 853 / 0 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 852 / 0 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 848 / 0 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 289 / 4e-93 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 279 / 7e-89 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10037620 [exp] 261 / 4e-82 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 261 / 4e-82 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10014260 [exp] 261 / 7e-82 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10017153 [exp] 257 / 1e-80 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10025960 [exp] 260 / 6e-76 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G157500.5 pacid=42778090 polypeptide=Potri.002G157500.5.p locus=Potri.002G157500 ID=Potri.002G157500.5.v4.1 annot-version=v4.1 ATGAACAACAACAATAGAGGAAGGTATCCGCCGGGGATCGGTGCCGGTAGAGGCGGAGGTATGAACGCGAACCCTAATTTTCAATCAAGGGTTCCGCAAC AGCAGTATGTGCAGAGAAATTTCGGGCAAAATCATCACCAACAACAATACTATCAGCATCAACAGCATCACAATCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGTGGTTGAGGAGGAATCAGTTAACTGCTGCGGATTCGAGTATTGATGAGGTCGAAAAGACTGTTCAGTCTGAGGCTGTTGACTCGAGTTCACAAGAT TGGAAGGCAAAGCTAAAGATACCACCAGCAGATACGCGATACAGAACTGAGGATGTGACAGCCACAAAGGGGAATGATTTCGAGGACTATTTTCTGAAGC GTGAGTTGCTTATGGGAATATACGAGAAGGGTTTTGAAAGACCATCTCCTATTCAGGAAGAGAGCATACCAATTGCTCTTACTGGTAGCGATATTCTTGC TAGAGCTAAAAATGGGACAGGGAAAACAGCTGCATTTTGCGTCCCTGCCCTGGAAAAAATTGACCAAGATAACAATTTTATTCAAGTTGTGATACTTGTG CCAACACGTGAGTTGGCTCTTCAGACATCACAGGTTTGTAAGGAGCTAGGGAAGCATTTGAAAATTCAAGTGATGGCCACCACTGGCGGTACGAGTCTAA AAGATGACATTATGCGTTTATATCAACCAGTCCATTTACTTGTCGGAACTCCAGGAAGAATACTTGATCTTGCAAAAAAGGGCGTGTGTATTTTGAAAAA CTGTTCAATGCTTGTTTTGGATGAGGCCGATAAGCTTTTGTCTCCAGAGTTTCAACCTTCAATAGAGCAGCTTATTCGTTTTCTTCCTTCAAATCGTCAG ATTTTGATGTTTTCAGCTACATTTCCAGTTACTGTTAAGGATTTTAAAGATAGATATCTAGAGAAGCCTTATGTTATCAATCTTATGGATGAACTTACTC TCAAGGGTATTACACAATATTATGCTTTCGTTGAAGAACGACAGAAAGTCCATTGCCTGAACACTCTTTTCTCTAAGCTGCAAATAAACCAATCAATCAT CTTTTGCAACTCAGTGAACCGGGTAGAATTACTGGCCAAGAAGATCACAGAACTTGGCTATTCATGTTTCTATATCCATGCAAAGATGTTACAGGACCAT CGCAACAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTCTGTACTGATCTTTTTACCAGGGGTATAGACATCCAAGCAGTGAATGTTG TTATAAACTTTGACTTCCCCAAGAACGCAGAGACATACCTTCACAGGGTTGGTCGATCAGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCAC TTATGAGGACCGTTTTAACCTGTATAGGATTGAGCAGGAACTTGGAACTGAAATTAAACAAATTCCTCCACATATTGATCAGACAATATATTGCCAATAA
AA sequence Show only first row Show all	>Potri.002G157500.5 pacid=42778090 polypeptide=Potri.002G157500.5.p locus=Potri.002G157500 ID=Potri.002G157500.5.v4.1 annot-version=v4.1 MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRNFGQNHHQQQYYQHQQHHNQQQQQQQQQQWLRRNQLTAADSSIDEVEKTVQSEAVDSSSQD WKAKLKIPPADTRYRTEDVTATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNFIQVVILV PTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQ ILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQTIYCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	0	1
AT2G26920			Ubiquitin-associated/translati...		Potri.001G225200 [exp]	2.23	0.6930
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.016G072300 [exp]	6.16	0.7021	E2Fa2-1,E2F3.2
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	6.70	0.7011
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	7.34	0.6683
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	8.24	0.7040	UBP6.1
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G085700 [exp]	10.58	0.6748
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	12.64	0.6675
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.012G142200 [exp]	13.49	0.6281
AT3G05940			Protein of unknown function (D...		Potri.005G000300 [exp]	15.36	0.6998
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	18.70	0.6025

Compare expression of checked genes

Potri.002G157500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.