Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 500 / 2e-174 DTA2 downstream target of AGL15 2 (.1.2) AT3G48980 495 / 2e-172 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61270 489 / 1e-170 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 476 / 5e-165 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 451 / 4e-156 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 452 / 1e-155 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 448 / 3e-153 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 357 / 1e-118 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157900 [exp] 573 / 0 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 535 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 519 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 514 / 6e-180 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.001G252000 [exp] 326 / 8e-107 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 71 / 6e-15 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 466 / 7e-161 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 448 / 2e-154 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 442 / 1e-151 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 441 / 7e-151 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 425 / 4e-146 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 363 / 2e-121 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 341 / 3e-112 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 337 / 1e-110 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 327 / 8e-105 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 258 / 3e-82 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF05686 [poplar] [flax] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Potri.002G157800.2 pacid=42777226 polypeptide=Potri.002G157800.2.p locus=Potri.002G157800 ID=Potri.002G157800.2.v4.1 annot-version=v4.1 ATGATTTTTATAAACACTTTCCGAGCCATGAAGAGATCATCAGCTTCAACAATTCTATTTCTTTTCTTCATCATCCTCCTTGCCGGTGCTTTGTGTTTTT GGATTGACATGTCTGTTATAGTTGCTGTGCCTCTCAGTCTGAGAAATCGTTTTACCGGAAGACCAAGGACGTCGACCGAGTTTTCACTCAATTGTTCCAA TCAAAGCACCACCACATCATGCGTTGGAGCCAATGAATCATCAGCCATGGCATGTCCAGGTTTTTTCCGATGGATCCACGAGGATCTACGGCCGTGGAAG GATACGGGAATCTCAAGGGACATGCTAGAAAGAGCTAGGAAACATGCACATTTTAGACTGGTGATTGTTGAGGGCAAGGCTTATGTGGAGCAATACAGCA AGCCCTATCAAACAAGAGATGTGTTCACAATATGGGGTATTTTGCAACTTCTCAACTTGTACCCTGGAAAGATACCAGACTTGGAGCTGATGTTTCGATG CGGAGATAAGACTGTGATACAGAAACATGATATCCAGGGCTCCGATGCCATGTCGCCCGCAGTGCTATTTCAATATTGTGGACACAGTACAGCGTTGAAT ATCGTCTTCCCTGACTGGACATTCTGGGGCTGGGCCGAGACCAATATAAAACCTTGGAAAATTGTGCTAGAAGGAATGGTTGAGGGCAATAAGAAGATTA AGTGGCAGGACAGGGAACCATATGCTTATTGGAGGGGAAATCCCCATGTCTCTCCAAATAGGGAAGACCTTATGAAGTGCAATGTCTCGGACAAGTATGA CTGGCTTGCTCGCCTCTATGAACAGAACTGGGGTAAAGAAAGGGAGCAAGGGTATAAACATTCAAAACTAGAAGACCAATGCACCCACAGATACAAAATT TATATAGAAGGGAATTCATGGTCAGTAAGTGAGAAGTATATCTTAGCATGCGATTCCATGGCTTTGCTCATAAAGCCCGAGTACTACGATTTCTTCAGTA GAAGCATGGAGCCAATGCAGCACTACTGGCCCATTAGGGCTAGCAACAAGTGCAAAGATATCAAGTTTGCTGTAGAATGGGGCAACAACCACTCAGTTGA TGCACAGGCCATTGGGAAGGCAGGAAGCAAGTTTATTCAGGAAAACCTGAAAATGGAATATGTGTACGAGTATATGTTTCATTTGTTCAAGGAGTATGCA AAACTCCTGAGATTCAAGCCAAAAATACCGGCAGGCGCCGTCGAGGTCAGTTCTGAATCTACGGCAAGTTCTCTGGGTGGTTTATGGAAAATGTTCATTT TGGAATCAGTGGTGAAGTCTCCCGGTGATGCACTTGTTCCATGCACTGCGCCTCCTCCTTATGATGCTCACACCCTTCAAGATTTATTTCAGAGGAAGGA GAATGTGAGGAGGCAGGTGGAGATGTGGGGGGATGAATACTAG
AA sequence Show only first row Show all	>Potri.002G157800.2 pacid=42777226 polypeptide=Potri.002G157800.2.p locus=Potri.002G157800 ID=Potri.002G157800.2.v4.1 annot-version=v4.1 MIFINTFRAMKRSSASTILFLFFIILLAGALCFWIDMSVIVAVPLSLRNRFTGRPRTSTEFSLNCSNQSTTTSCVGANESSAMACPGFFRWIHEDLRPWK DTGISRDMLERARKHAHFRLVIVEGKAYVEQYSKPYQTRDVFTIWGILQLLNLYPGKIPDLELMFRCGDKTVIQKHDIQGSDAMSPAVLFQYCGHSTALN IVFPDWTFWGWAETNIKPWKIVLEGMVEGNKKIKWQDREPYAYWRGNPHVSPNREDLMKCNVSDKYDWLARLYEQNWGKEREQGYKHSKLEDQCTHRYKI YIEGNSWSVSEKYILACDSMALLIKPEYYDFFSRSMEPMQHYWPIRASNKCKDIKFAVEWGNNHSVDAQAIGKAGSKFIQENLKMEYVYEYMFHLFKEYA KLLRFKPKIPAGAVEVSSESTASSLGGLWKMFILESVVKSPGDALVPCTAPPPYDAHTLQDLFQRKENVRRQVEMWGDEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23850			Arabidopsis thaliana protein o...		Potri.002G157800 [exp]	0	1
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177366 [exp]	1.00	0.9656
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Potri.006G229200 [exp]	4.00	0.9424
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G115900 [exp]	12.40	0.9443	CLPR2.1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140800 [exp]	21.21	0.9286	GSTA.1
AT4G21445			unknown protein		Potri.004G033400 [exp]	21.35	0.9434
AT1G62250			unknown protein		Potri.011G006700 [exp]	23.97	0.9242
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G117200 [exp]	27.45	0.9299	Pt-ZOG1.9
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	28.80	0.9314	VP2.2
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.002G006100 [exp]	29.39	0.9336
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.003G119200 [exp]	30.08	0.9371

Compare expression of checked genes

Potri.002G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.