Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 536 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 530 / 0 DTA2 downstream target of AGL15 2 (.1.2) AT3G48980 526 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61270 513 / 1e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 510 / 2e-178 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 502 / 3e-176 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 493 / 2e-171 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 477 / 1e-164 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 369 / 2e-123 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157800 [exp] 599 / 0 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 565 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 558 / 0 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.003G125000 [exp] 552 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 341 / 1e-112 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 89 / 2e-21 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 504 / 6e-176 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 485 / 2e-168 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 482 / 4e-167 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 474 / 8e-165 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10039226 [exp] 430 / 4e-148 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 384 / 1e-129 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 353 / 8e-115 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 344 / 1e-113 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 343 / 4e-113 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 281 / 4e-91 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF05686 [poplar] [flax] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Potri.002G157900.2 pacid=42779482 polypeptide=Potri.002G157900.2.p locus=Potri.002G157900 ID=Potri.002G157900.2.v4.1 annot-version=v4.1 ATGAAGAGATGGGGTTCGCCAACTGTTTTCTTCTTCTTCTTCTTGGTCCTACTGCTTGGAGCTTTCTTTCACTGGGTTGATCATACTATTATTACAAGTA TCAAAGGACATAAGAAATCCCCCAGCATAATTGAGCTCCCGCTCAAACGCTCCCTCGATGGAAGCATGGAGCAATCACGCGTGTCCAATTATCCAGTGAT ATTCAGGCCTAACAACTTATCATCCACAGCATGCCCGGAGTACTTTCGGTGGATCCACGAGGATCTACGGATCTGGAAGAGCACGGGAATCTCAAGGGCC ATGGTGGAAAGAGCTAAAGATTATGCACATTTTAGATTGGTGATTCTCAAGGGAAAGATTTATGTGGAGAAATATAAGAAGTCATTTCATACAAGAGATG TGTTTACAATATGGGGTATCTTGCAACTGCTAAGGTTGTATCCTGGAAAGGTGCCAGACCTGGAACTTATGTTCTGGTGTGATGACAGGCCTGTGATCCT GAAGAAAGATTACCAAGGAACAAATGCCACTTCGTCACCATCCATATTTCAATATTGTGGGCGTGAGGATGCTTTGGGCATTGTCTTTCCTGACTGGACC TTTTGGGGTTGGGCTGAGACCAATGTAAGCCCATGGAAAACCCTGTCCAAGGACTTAAAAGAAGCCAACAAAAGGACCAAGTGGAAGGATAGGGTACCCT ATGCTTATTGGAGAGGGAACCCAAACGTGGCTGCATCTAGGAGACAACTCATGTGGTGCAATGTTTCTGACAAATACGACTGGAATGCTCGTCTCTACAA ACAGGATTGGCGTACAGAGAGTGAGCAAGGATATGAACATTCAAGATTGGAAGACCAATGCACACACAGGTACAAGATTTATATAGAAGGAAGGGGATGG TCAGTGAGTGACAAGTATATATTAGCATGCGATTCCATGACTTTGTTCGTAAAGCCCGAGTACTACGATTTCTTCATTAGAAGTATGGTACCGTTGCAGC ACTACTGGCCCGTTAGCGCCAGAAACAAGTGCAGAGATATCAAGTTTGCTGTCGAATGGGGCAACAACCATACTGATAAGGCACGGGCTATCGGGAAGGC AGGGAGCAAGTTTATTCAAGAAAATCTAAAAATGGAATATGTGTATGATTACATGTTTCATTTATTAACAAATTATGCGAATCTCTTAAAATTCAAACCG AGAATTCCTGAAGGGGCAGTTGAGGTGTATTCAGAGACTATGGCACGCCCTCATAGAGGTTTATGGAAGAAATTCATGGCAGAGACTCTGGTGAACTTTC CTAGCGATACACTCCCATGTACAATGCCGCCTCCTTACGAGTCTCGTACACTTGAAGCTTTTATTGAGAGCAAGGAGACTGTTACAAGGCAAGTAGAGAG GTGGGAGAAAGAAAATTCGAAAAAAAATTAA
AA sequence Show only first row Show all	>Potri.002G157900.2 pacid=42779482 polypeptide=Potri.002G157900.2.p locus=Potri.002G157900 ID=Potri.002G157900.2.v4.1 annot-version=v4.1 MKRWGSPTVFFFFFLVLLLGAFFHWVDHTIITSIKGHKKSPSIIELPLKRSLDGSMEQSRVSNYPVIFRPNNLSSTACPEYFRWIHEDLRIWKSTGISRA MVERAKDYAHFRLVILKGKIYVEKYKKSFHTRDVFTIWGILQLLRLYPGKVPDLELMFWCDDRPVILKKDYQGTNATSSPSIFQYCGREDALGIVFPDWT FWGWAETNVSPWKTLSKDLKEANKRTKWKDRVPYAYWRGNPNVAASRRQLMWCNVSDKYDWNARLYKQDWRTESEQGYEHSRLEDQCTHRYKIYIEGRGW SVSDKYILACDSMTLFVKPEYYDFFIRSMVPLQHYWPVSARNKCRDIKFAVEWGNNHTDKARAIGKAGSKFIQENLKMEYVYDYMFHLLTNYANLLKFKP RIPEGAVEVYSETMARPHRGLWKKFMAETLVNFPSDTLPCTMPPPYESRTLEAFIESKETVTRQVERWEKENSKKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23850			Arabidopsis thaliana protein o...		Potri.002G157900 [exp]	0	1
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	2.23	0.9557	Pt-ATGSTF13.1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.019G125600 [exp]	3.74	0.9519
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188750 [exp]	4.24	0.9364
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	7.74	0.9440
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	9.21	0.9370
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Potri.004G126901 [exp]	12.64	0.9336
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	14.83	0.9263
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	14.96	0.9363
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	15.58	0.9291
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	15.81	0.9271

Compare expression of checked genes

Potri.002G157900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.