Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45850 219 / 4e-69 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 206 / 6e-64 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 185 / 1e-55 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 167 / 5e-49 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 166 / 2e-48 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63480 164 / 1e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 164 / 2e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 153 / 6e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 149 / 7e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 146 / 1e-40 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082100 [exp] 445 / 4e-158 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.003G126500 [exp] 233 / 1e-74 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 232 / 4e-74 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 180 / 3e-54 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 177 / 3e-53 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G005000 [exp] 178 / 8e-53 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G148600 [exp] 176 / 1e-52 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 175 / 2e-52 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 170 / 9e-50 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030381 [exp] 279 / 2e-92 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 271 / 2e-89 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10008533 [exp] 198 / 8e-61 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 189 / 3e-57 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 172 / 1e-50 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 168 / 3e-49 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 167 / 3e-49 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 160 / 3e-46 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 160 / 4e-46 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10011067 [exp] 160 / 4e-46 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.002G158200.1 pacid=42779411 polypeptide=Potri.002G158200.1.p locus=Potri.002G158200 ID=Potri.002G158200.1.v4.1 annot-version=v4.1 ATGGATAGAAGGGATACTATGACGATTTCGGGCTCTGCCTCCTTTTTTATGCAGGGTAGTGGTACACATCCTAGTTTAAATGTTTCATCTGGCATCAATA CTTTATCCAATATAAATGCACCATTTCAACCAAATATGGGAGCCAATACCATGGGATCTGCATTACTGATGGAACATCCGGCAGCAATTTCTGTGGGTGA ACTATCTACAATGGTATCCGGTCAACCTGAGAAAAGGAAAAGAGGGAGGCCACGGAAATACGGACCTGATGGGGCTGTATCATTGGCGTTGTCTCCCTCA CTGTCTACTCATCCCGAGACATCAATCCCATCCCAGAAGCGGGGTAGAGGGCGGCCACCAGGGACTGGGAGGAAGCAACAATTAGCTTCTCTTGGCGAAT GGCTGTCTGGTTCAGCTGGGATGGGTTTTACTCCGCATATCATCACCATTGCAGTAGGAGAAGACATTGCGACAAAAATAATGTCATTCTCACAGCAGGG TCCAAGAGCTATATGCATCTTGTCAGCAAATGGTGCTGTCTCTACCGTTACTCTGCATCAGCCATCAACTTCTGGAGGCACTGTCACATATGAGGGGCGC TTTGAAATTTTATGTTTATCTGGCTCTTACCTGTTCTCTAAAGATGGTGGCTCTCGCAATCGAACTGGTGGTTTGAGTGTCTCCCTAGCTAGTCCTGATG GTTGTGTTATTGGTGGAGGAGTTGGTGGAGTTCTTATTGCAGCAAGCCCTGTTCAGGTTATAGCCGGAAGTTTCTTGTGGGGTGGTTCAAAGACTAAAAA CAAGAAAGTGGAAGGTGCTGAAGTAGCCAGAGACTCGGACCATCAGACGGTTGAGAATCCAGTAACTCCAACTAGTGTTCAACCAAGTCTAAATCTTACT CCAACCTCTTCTATGGGTGTATGGCCTGGTTCTCGGTCAGTGGATATGCGTAACACCCATGTTGACATTGATCTGATGCGCGGATAA
AA sequence Show only first row Show all	>Potri.002G158200.1 pacid=42779411 polypeptide=Potri.002G158200.1.p locus=Potri.002G158200 ID=Potri.002G158200.1.v4.1 annot-version=v4.1 MDRRDTMTISGSASFFMQGSGTHPSLNVSSGINTLSNINAPFQPNMGANTMGSALLMEHPAAISVGELSTMVSGQPEKRKRGRPRKYGPDGAVSLALSPS LSTHPETSIPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPRAICILSANGAVSTVTLHQPSTSGGTVTYEGR FEILCLSGSYLFSKDGGSRNRTGGLSVSLASPDGCVIGGGVGGVLIAASPVQVIAGSFLWGGSKTKNKKVEGAEVARDSDHQTVENPVTPTSVQPSLNLT PTSSMGVWPGSRSVDMRNTHVDIDLMRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.002G158200 [exp]	0	1
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128500 [exp]	10.72	0.7282
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G028557 [exp]	15.39	0.7422
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	35.31	0.6915
AT5G23690			Polynucleotide adenylyltransfe...		Potri.012G105000 [exp]	37.50	0.7218
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	42.10	0.7172
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	70.01	0.6503
AT3G45740			hydrolase family protein / HAD...		Potri.010G216000 [exp]	94.14	0.6876
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	112.36	0.6448
					Potri.008G195300 [exp]	152.99	0.6175
AT5G40700			unknown protein		Potri.019G075700 [exp]	176.53	0.6300

Compare expression of checked genes

Potri.002G158200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.