Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 820 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 772 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 766 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 749 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 714 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 687 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 619 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 572 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 560 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 545 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082400 [exp] 964 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 795 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 794 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 769 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 755 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 733 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 730 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 622 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 621 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037856 [exp] 831 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 822 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 798 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 798 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 779 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10018849 [exp] 772 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10027743 [exp] 750 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 743 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 729 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10016454 [exp] 696 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G158400.1 pacid=42777947 polypeptide=Potri.002G158400.1.p locus=Potri.002G158400 ID=Potri.002G158400.1.v4.1 annot-version=v4.1 ATGGGGAGTCAGTGCACTAAGCTTACACGTTGTTGCGTAGATTCACAGTTCAAGGCAGCTGTTGTTGAAGTTCCTGATGTTGGAAATGAAGATAAGAGTG AGGTTAATGACTTGCCTACATTCCGCGAATTCACACTTGAGCAGCTGAAAAATGCAACATCTGGTTTTGCAGTACAAAATATTGTGTCTGAGCATGGGGA GAAGGCTCCCAATGTTGTTTATAAAGGGAAGCTTGAAAATCAGAGGAGGATTGCTGTTAAGCGATTCAATAAAATGGCCTGGCCTGATGCTCGACAATTT TTGGAGGAAGCGAGATCTGTTGGCCAGCTACGGAGTCATAGATTGGTAAATTTGCTTGGTTTCTGTTGTGAAGGTGATGAAAGGGTGCTTGTGGCAGAAT TTATGCTCAATGAGACACTTGCAAAACACCTTTTCCATTGGGAAACTCAACCTATAAAATGGCCGATGAGATTAAGAGTTGTTCTACATCTTGCAGAAGC TTTAGAATACTGCACAAGTAAAGGGCGTGCCCTTTACCATGACCTTAATGCCTATAGAATTTTGTTTGATGAGGATGGTAATCCAAAACTTTCCAGCTTT GGCCTCATGAAAAACAGCAGGGATGGAAAAAGTTATAGTACGAATCTGGCTTTTACTCCTCCTGAGTATTTGAGAACTGGGAGAGTAACACCAGAGAGTG TAATATATAGTTTTGGCACTCTTTTGCTTGACCTTCTCAGTGGAAAGCATATCCCCCCAAGTCATGCCCTTGACTTGATACGGGATAGAAATCTTCAGAT GTTGACAGATTCTTGTTTGGAAGGACAGTTTTCCAGTGATGATGGGACTGAGTTAGTACGCCTGGCTTCTCGATGTTTACAGTATGAACTCCGAGAGCGG CCAAGTCTGAAATCCTTAGTCGCTGCTTTGACTCCTCTTCAGAAGGAAAATGATGTTCCTTCTCATATCTTGATGGGTATCCCACATGGTGCTTCATCCT CTCCTTTGTCACCATTTGGCGAGGCTTGCTCTAGAAGGGACCTGACAGCCATAAATGAGATCTTAGACAATATTGGCTATAAAGATGATCAAGGAGTGGC AAATGAGCTCTCATTCCAAATGTGGACAGATGAGATGCAGGAGACTTTAAATACAAAGAAAAAGGGTGATTCTGCTTTCAAGCAGAAAGACTATAGAATT GCAATTGAGTGTTACACTCAGTTCATTGATGTGGGAACCATGGTTTCCCCAACTGTTTTTGCCCGGCGGAGTCTGTCCTATCTCATGAGTGACCTGCCTC AGGAAGCTCTAAGTGATGCAATGCAAGCCCAAGTCATTTCCCCTGTATGGCACGTGGCATCGTATCTTCAGGCTGTTGCCCTTGCTACACTTGGAATGGA AAATGAAGCACATGCTGCGCTCAAGGAGGGTACAAATCTTGAAGCTGAGAAAAATGCAAACTCTGGACAAAAGTGA
AA sequence Show only first row Show all	>Potri.002G158400.1 pacid=42777947 polypeptide=Potri.002G158400.1.p locus=Potri.002G158400 ID=Potri.002G158400.1.v4.1 annot-version=v4.1 MGSQCTKLTRCCVDSQFKAAVVEVPDVGNEDKSEVNDLPTFREFTLEQLKNATSGFAVQNIVSEHGEKAPNVVYKGKLENQRRIAVKRFNKMAWPDARQF LEEARSVGQLRSHRLVNLLGFCCEGDERVLVAEFMLNETLAKHLFHWETQPIKWPMRLRVVLHLAEALEYCTSKGRALYHDLNAYRILFDEDGNPKLSSF GLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSSDDGTELVRLASRCLQYELRER PSLKSLVAALTPLQKENDVPSHILMGIPHGASSSPLSPFGEACSRRDLTAINEILDNIGYKDDQGVANELSFQMWTDEMQETLNTKKKGDSAFKQKDYRI AIECYTQFIDVGTMVSPTVFARRSLSYLMSDLPQEALSDAMQAQVISPVWHVASYLQAVALATLGMENEAHAALKEGTNLEAEKNANSGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	0	1
AT3G13980			unknown protein		Potri.006G144700 [exp]	1.41	0.9150
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	2.00	0.9065
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	2.82	0.9108
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	5.00	0.9007
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	8.48	0.8816
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	8.83	0.8898
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	8.83	0.8706
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	9.48	0.8843
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	9.79	0.8921
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	11.53	0.8840	Pt-ECR1.1

Compare expression of checked genes

Potri.002G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.