Plant FIBer expression Database

Potri.002G158500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01730 77 / 3e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G082600
[exp]
241 / 2e-79 AT1G01730 84 / 1e-18 unknown protein
Potri.015G145000
[exp]
61 / 1e-11 AT1G01730 48 / 8e-07 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030384
[exp]
94 / 8e-24 AT1G01730 109 / 8e-30 unknown protein
Lus10037855
[exp]
64 / 3e-13 AT1G01730 74 / 2e-17 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G158500.1 pacid=42777316 polypeptide=Potri.002G158500.1.p locus=Potri.002G158500 ID=Potri.002G158500.1.v4.1 annot-version=v4.1
ATGGAAGAACCACAACCAGTCCAGGACCCACCAAATCTCCAAAACCTACCCGTTCAAAACCCAGACCCGAATCCAAACTCAGACCTACCTTTCACGGCAC
CATCTGACCCTCCACCAGCACCGCCACCGCCACCAGCAGCAGTACCGACACCACCACCTCCTCCTGTCCTTCCTGAAAGCAAGAAGAGATCACTTGACAA
TTACGGTCCAATTCAAGAATGCAGATACTTCAAGATGCGCGCTATTGTCAAAGATATCAGATCCCATTTTCTTGAGATGCTTCGAACAGTGGACTTCCAG
AGTTGCAAAGGAGCCGAGGAACTTCAAGAAAAGCTGAAGCTGCTTATGGAACTATACAAGCAGATGACAGCAGAAAAGCTCAGTACAACCAATTGGAAGA
CTGCACCCAACTCTGGTGAAAATGGGGTAGGACTAAAGCCCCAGGAGCAGCTTCATGACACAGCAGATCAGACCCGACCAGGCCATGTTTTTGCAAAACT
ATCTGAAAAGCAGCAAGCCGAACATAGTCAGAATCAAGGGACACATATTGTTGGAGGATCGGCTTTTGGCTGGAATTTTATCACCTTTACTGGCAGCATG
CCAATCTACTATGGAAGAACAAAGGAATCATTCCGAGCTGCTCATGTGACTTTGTAG
AA sequence
>Potri.002G158500.1 pacid=42777316 polypeptide=Potri.002G158500.1.p locus=Potri.002G158500 ID=Potri.002G158500.1.v4.1 annot-version=v4.1
MEEPQPVQDPPNLQNLPVQNPDPNPNSDLPFTAPSDPPPAPPPPPAAVPTPPPPPVLPESKKRSLDNYGPIQECRYFKMRAIVKDIRSHFLEMLRTVDFQ
SCKGAEELQEKLKLLMELYKQMTAEKLSTTNWKTAPNSGENGVGLKPQEQLHDTADQTRPGHVFAKLSEKQQAEHSQNQGTHIVGGSAFGWNFITFTGSM
PIYYGRTKESFRAAHVTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01730 unknown protein Potri.002G158500
[exp]
0 1
AT5G08415 Radical SAM superfamily protei... Potri.013G136000
[exp]
4.89 0.6601
AT5G23300 PYRD pyrimidine d (.1) Potri.007G074101
[exp]
5.47 0.6944
AT1G79650 AtAO1, RAD23B, ... RADIATION SENSITIVE23B, Arabid... Potri.003G186600
[exp]
9.00 0.6645 RAD23.2
AT4G17260 Lactate/malate dehydrogenase f... Potri.001G122400
[exp]
10.95 0.6250
AT5G15530 BCCP2, CAC1-B biotin carboxyl carrier protei... Potri.004G119000
[exp]
12.16 0.6723
AT5G09590 HSC70-5, mtHSC7... HEAT SHOCK COGNATE, mitochondr... Potri.001G285100
[exp]
12.64 0.6408
AT1G17890 GER2 NAD(P)-binding Rossmann-fold s... Potri.018G101700
[exp]
15.87 0.5709 GER1.3
AT5G57370 unknown protein Potri.018G091300
[exp]
16.73 0.6612
AT3G50620 P-loop containing nucleoside t... Potri.007G042100
[exp]
16.73 0.6154
AT5G20180 Ribosomal protein L36 (.1.2) Potri.006G069000
[exp]
19.62 0.6223

Potri.002G158500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.