Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00525 106 / 6e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083100 [exp] 238 / 1e-81 AT4G00525 99 / 5e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030386 [exp] 108 / 3e-30 AT4G00525 98 / 1e-26 unknown protein Lus10037852 [exp] 108 / 3e-30 AT4G00525 85 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G159100.3 pacid=42777893 polypeptide=Potri.002G159100.3.p locus=Potri.002G159100 ID=Potri.002G159100.3.v4.1 annot-version=v4.1 ATGTCGTCTAACAATCCGAACCAAACCATTCGGAGCCCAGAAAAACCCGAATCCAAATTCGAAGACGAGGCGGAGGACGAGGAGGAAGCGGAGGAATTGG AGCAGTTGGAGACACAAGTGAAGCAAATGGCAAAGAAGATTCTCGAGTACAGAGTCACTTTACCTGATCAACTCAAAACTACTCTCGCTTTGCTTCTTTC TTCGCAACGACCCATCTTACCTGATTGCGATTCCGGCTCGGATCCTGGGCCCTCCGGTGAACTTAACCCAGATTCAGGAGGACAGGACAAATCCAGTAGA GCGGCATTACTAACAAAAGAAGACCGAAAGACTGCCGAGAAAGTACATTTGTTGAAAGAGAAAATATCTAGCAATGTCTCTACAATGCCTGTAGTTTTAA AGAGGATGAAAGATTGTATTTCTAGGATTAACAAACTAGATTCCTACAATGGAAGCATACATCCGGCTTTTAAAAAGAAAAAGACAGGCTGA
AA sequence Show only first row Show all	>Potri.002G159100.3 pacid=42777893 polypeptide=Potri.002G159100.3.p locus=Potri.002G159100 ID=Potri.002G159100.3.v4.1 annot-version=v4.1 MSSNNPNQTIRSPEKPESKFEDEAEDEEEAEELEQLETQVKQMAKKILEYRVTLPDQLKTTLALLLSSQRPILPDCDSGSDPGPSGELNPDSGGQDKSSR AALLTKEDRKTAEKVHLLKEKISSNVSTMPVVLKRMKDCISRINKLDSYNGSIHPAFKKKKTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00525			unknown protein		Potri.002G159100 [exp]	0	1
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	5.47	0.6895
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.016G138900 [exp]	8.36	0.6872
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.008G053800 [exp]	10.09	0.6697	Pt-UBC13.3
AT5G25360			unknown protein		Potri.006G254000 [exp]	10.39	0.5847
AT1G49400		EMB1129	embryo defective 1129, Nucleic...		Potri.018G150100 [exp]	18.43	0.6211
AT4G30820			cyclin-dependent kinase-activa...		Potri.018G103200 [exp]	19.13	0.6147
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	23.95	0.6088
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	26.07	0.5415
AT5G49610			F-box family protein (.1)		Potri.011G004800 [exp]	35.49	0.5758
					Potri.015G072666 [exp]	40.00	0.6070

Compare expression of checked genes

Potri.002G159100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.