Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00500 618 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 603 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 446 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 75 / 3e-14 alpha/beta-Hydrolases superfamily protein (.1) AT3G14075 70 / 1e-12 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 69 / 3e-12 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT1G05790 44 / 0.0002 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083600 [exp] 802 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 655 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 620 / 0 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 479 / 2e-167 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 461 / 2e-160 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G222000 [exp] 75 / 3e-14 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 71 / 6e-13 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 66 / 2e-11 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 60 / 2e-09 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037847 [exp] 659 / 0 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 582 / 0 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 558 / 0 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 553 / 0 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 263 / 2e-85 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 262 / 5e-85 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 162 / 3e-48 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 94 / 2e-22 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 82 / 3e-16 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 81 / 4e-16 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3) CL0028 [poplar] [flax] AB_hydrolase PF03893 [poplar] [flax] Lipase3_N Lipase 3 N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.002G159200.2 pacid=42780092 polypeptide=Potri.002G159200.2.p locus=Potri.002G159200 ID=Potri.002G159200.2.v4.1 annot-version=v4.1 ATGTCAATCCTCTGTGGCCTTCCAATCCTTGAATGTGTGTACTGCCTTGGCTGTGCTCGTTGGCTATGGCAAAAATGCCTTTACACCGCTGGTCATGAAA GTGAGAACTGGGGCTTAGCCACAGCTGAAGAATTTGAGCCCGTGCCTCGTCTTTGTCGCCTAATCCTATCAGTCTATGAAGATGATCTTCGGTACCCACT TTGGGCACCGCCAGGTGGCTATGGTATTAACCCTGATTGGGTAATTGTGAAGAGAACTTATGAAGAAACTGGGGGATGTGCTACTCCTTATATGATTTAC CTGGATCATGATAATGTTGAAATAGTGTTGGCTATTAGAGGGCTTAATTTGGCAAAGGAAAGTGATTATGCAGTTCTACTTGATAATAAATTGGGGCAGA CCAAGTTTGATGGTGGTTACGTGCATAATGGGCTATTGAAGGCTGCAAAGTGGATTTTTGATGCAGAATGTGAGCTTTTGAGGGATTTGGTTGAGATGAA TCCAGATTATAGGTTAACTTTTGCTGGACATTCGTTAGGTGCAGGGATAGTGTCATTGATAGCAATGTATGCTGTTCAGAATCGGGAGAAATTGGGGACC ATTGAGAGGAATAGGATCAGATGCTTTGCCATGGCTCCTGCTAGATGCGTGTCACTGAATTTGGCAGTGAGATATGCTGATGTTATCAATTCTGTCGTGC TTCAGGATGATTTCTTACCTCGGACAACTACTGCTCTGGAAGATGTTTACAAATCAATTTTCTGTTTGCCTTGCCTGCTTTGCCTGATGTGCTTGAAGGA TACTTGCACTCTCGAGGAGAAGATGCTTAAGGATCCAAGGCGGCTATACGCACCTGGCCGCCTATACCATATTGTTGAGAGGAAGCCCTTCAGGATAGGA AGATTTCCTCCAGTTGTCAGAACAGCAGTCCCTGTGGACAGGCGCTTCGAGCACATAGTTCTTTCATGCAACGCGACTTCTGATCACACCATTATCTGGT TAGAGAGGGAATCTCAAAGGGCTGTTGATTTGATGCTAGAGAAAGATCGGATAATGGAAATTCCAGCACAACAACGGATGCGGCGGCAGGAGTCTCTTGC ACGCGAGCACAGTGAAGAATACGAGGCAGCACTTCGGAGAGCTATTGCTCTGGACATCCCACAGGCATCCTACTCGCCTTCTTATGGAACCTTTGCTGAA GTGGAAGAAGGGGAGAGTTCTGGCAGCTCAAGTGGAGCAGGTTCGCTGTTGTCGTTTAAGAGAATGAGGGAGCGTTGGGACAACTTTATAGAGCGTCTTT TTGATGTGGATGAATCTGGTCGAATGGTGTTCAAGAAGTCTTCCACCTAG
AA sequence Show only first row Show all	>Potri.002G159200.2 pacid=42780092 polypeptide=Potri.002G159200.2.p locus=Potri.002G159200 ID=Potri.002G159200.2.v4.1 annot-version=v4.1 MSILCGLPILECVYCLGCARWLWQKCLYTAGHESENWGLATAEEFEPVPRLCRLILSVYEDDLRYPLWAPPGGYGINPDWVIVKRTYEETGGCATPYMIY LDHDNVEIVLAIRGLNLAKESDYAVLLDNKLGQTKFDGGYVHNGLLKAAKWIFDAECELLRDLVEMNPDYRLTFAGHSLGAGIVSLIAMYAVQNREKLGT IERNRIRCFAMAPARCVSLNLAVRYADVINSVVLQDDFLPRTTTALEDVYKSIFCLPCLLCLMCLKDTCTLEEKMLKDPRRLYAPGRLYHIVERKPFRIG RFPPVVRTAVPVDRRFEHIVLSCNATSDHTIIWLERESQRAVDLMLEKDRIMEIPAQQRMRRQESLAREHSEEYEAALRRAIALDIPQASYSPSYGTFAE VEEGESSGSSSGAGSLLSFKRMRERWDNFIERLFDVDESGRMVFKKSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.002G159200 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	24.59	0.6975
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	65.19	0.6334
AT5G45290			RING/U-box superfamily protein...		Potri.002G140500 [exp]	80.96	0.6099
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	82.70	0.6634	Pt-CNGC.2
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	104.23	0.6118
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.013G019200 [exp]	135.45	0.6520
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.010G228500 [exp]	135.94	0.6326
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	146.59	0.6132
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.006G000800 [exp]	171.65	0.6362
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.009G040600 [exp]	193.74	0.6314

Compare expression of checked genes

Potri.002G159200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.