Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45880 858 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 712 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G45300 581 / 0 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT4G15210 444 / 1e-149 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 446 / 3e-149 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G17090 415 / 2e-137 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 402 / 6e-132 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 293 / 9e-91 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 233 / 4e-68 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT1G19350 58 / 1e-08 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083700 [exp] 1075 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 749 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G106500 [exp] 596 / 0 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 429 / 3e-142 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 414 / 5e-137 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 404 / 8e-133 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 398 / 2e-130 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 396 / 5e-130 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 305 / 2e-94 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018842 [exp] 870 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10037846 [exp] 661 / 0 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 619 / 0 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10035679 [exp] 585 / 0 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017820 [exp] 573 / 0 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10039701 [exp] 438 / 3e-145 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 425 / 8e-142 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 426 / 2e-141 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 403 / 9e-133 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 401 / 5e-132 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14 CL0058 [poplar] [flax] PF05687 [poplar] [flax] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G159300.16 pacid=42777232 polypeptide=Potri.002G159300.16.p locus=Potri.002G159300 ID=Potri.002G159300.16.v4.1 annot-version=v4.1 ATGGCAACGGATATCCAAAAATTAATAGGAACAAGTGAAGAAGATGATGATGAAGAAATGGACATGGACGTTAAAGAGGAAGATGATGAAGATGAAGAAA ATGGAGGGAAGAATATTGCTGCACAGATTATGGCAGGAGGGGGTGGAGGGATGGCATCAAACAATAGTGATAATCAGTTTCAACATCAACAGCAATTTCA AGAGCAGGTTACCACTCCAGCAGGAGGAGCTCGGAGGTCTAGACCGCTTGAAGAAAAGGAGAGGACGAAGCTAAGAGAGCGACACCGGAGGGCAATCACA GCAAGGATCTTGGCAGGATTAAGGAGGCATGGGAATTACAATCTTAGAGTTAGAGCTGATATAAATGATGTAATTGCTGCTTTGGCTAGGGAAGCTGGCT GGGTTGTTCTTCCAGATGGAACTACCTTCCCTTCAAGATCTCAGGTGCTTATCTCTCAACAGGGCTCAAGGCCTGCGGGTGGCACTTCTGCTGCAGTAAC ATCATCTTCTTCTCATCTGGTGTCACAACAGACTCCACCGGCTTCCCTTAGAGGAGTCTCTCCTGGTTATCAGACCTCAGTTGAGTACAGTACATGCAGT ATGAAAGGTGTTTTTATGCCCAACCCCTCACCTTATGATCTATCAGCAAGCACTCAGCCACAGATCCCAGCAGTGGTGGGGGAGGGAGGAGAGCAAACAG AGAGCAATCTCCATATTGGTGGCTCCATGGACATCATAAATGACAAGCAGATTGTTGACATACCTCCAATTCCAAAGCTACCAGAGCGGGATTTTGCTGG CACTCCATTCATACCAGTTTATGTGATGTTACCATTGGGTGTCATAAATATGAAATGCGAGCTGGTTGATCCAGATGACCTACTGAAGCAGCTCAAGGTC TTGAAATCTGCCAATGTTGATGGCATTATGGTTGACTGCTGGTGGGGCATAGTAGAGGCTCACACTCCTCAGGAGTATAACTGGAGTGGGTACAGTAGGC TCTTCCAGATGGTGCGTGAACTTAAGCTTAAGTTACAGGTTGTGATGTCATTTCATGAATGTGGAGGCAATGTTGGTGATGATGTGTGTATTCCCCTGCC ACATTGGGTGGCAGAAATTGGACGAAGTAATCCTGACATTTTCTTCACTGATAGAGAAGGCAGGCGCAACCCAGAATGTCTTTCATGGGGAATCGACAAA GAACGAGTGTTAAGAGGCCGTACTGCTGTTGAGGTGTACTTTGACTACATGAGAAGCTTCCGAGCAGAATTTGATGAATGTTTTGCTGATGGTATCATCT CCATGGTTGAAGTTGGACTTGGTCCTTGTGGGGAGCTACGTTACCCATCTTGTCCAGTGAAGCATGGCTGGAGATATCCTGGCATTGGTGAATTTCAGTG TTATGATCAGTATTTGCTGAAAAGCTTAAAGAAGACAGCAGAAGCAAGGGGACATCCTTTCTGGGCCAGGGGACCAGATAATGCTGGTTTCTATAATTCC CAGCCACATGAAACTGGTTTCTTCTGTGATGGAGGGGACTATGATGGGTATTATGGCAGGTTCTTCCTTAATTGGTATACTAGGATTTTAGTTGATCATG GTGATCGGGTACTTTCTTTGGCAAAGTTAGCTTTCGAAGGCACTCAAATTGCTGTGAAGCTATCAGGTATTCATTGGTGGTACAAGACAGCCAGTCATGC TGCTGAATTAACTGCTGGGTTCTACAACCCATGCAATCGTGATGGCTATGCTGCAATTGCAGAAATGCTAAAGAAGCATAAAGCTGCTTTAAACTTCTCG TGTTCTGAATCACGGATGGGAGACCAGCAAGTGGACTTTGCAGAGGCACTTGCAGATCCTGAGGGATTAGTATGGCAAGTGCTGAATGCTGCGTGGGAAG TTGGCATTCCAATTGCCAGCGAGAACGCTCTTCCATGCCATGATAGGGTCACATATAACAAGATTCTGGATAACGCCAAACCATTGAATGATCCAGATGG AAAGCATTTTTTGTCTTTTACTCACCTTAGGCTCAGCCCACTTCTAATGGAGAGACAAACCTTCGTGGAATTTGAACGCTTTGTCAAGAGAATGCATGGG GAAGCAGTTGTCGAACTCCGGGTATAG
AA sequence Show only first row Show all	>Potri.002G159300.16 pacid=42777232 polypeptide=Potri.002G159300.16.p locus=Potri.002G159300 ID=Potri.002G159300.16.v4.1 annot-version=v4.1 MATDIQKLIGTSEEDDDEEMDMDVKEEDDEDEENGGKNIAAQIMAGGGGGMASNNSDNQFQHQQQFQEQVTTPAGGARRSRPLEEKERTKLRERHRRAIT ARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVLISQQGSRPAGGTSAAVTSSSSHLVSQQTPPASLRGVSPGYQTSVEYSTCS MKGVFMPNPSPYDLSASTQPQIPAVVGEGGEQTESNLHIGGSMDIINDKQIVDIPPIPKLPERDFAGTPFIPVYVMLPLGVINMKCELVDPDDLLKQLKV LKSANVDGIMVDCWWGIVEAHTPQEYNWSGYSRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDK ERVLRGRTAVEVYFDYMRSFRAEFDECFADGIISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLKKTAEARGHPFWARGPDNAGFYNS QPHETGFFCDGGDYDGYYGRFFLNWYTRILVDHGDRVLSLAKLAFEGTQIAVKLSGIHWWYKTASHAAELTAGFYNPCNRDGYAAIAEMLKKHKAALNFS CSESRMGDQQVDFAEALADPEGLVWQVLNAAWEVGIPIASENALPCHDRVTYNKILDNAKPLNDPDGKHFLSFTHLRLSPLLMERQTFVEFERFVKRMHG EAVVELRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	0	1
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	1.00	0.8142
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	6.00	0.7828
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	11.87	0.7693
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	15.49	0.7309
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.001G298400 [exp]	16.49	0.7042
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	16.61	0.7268	CHR919
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	17.43	0.7333	SNT901
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	18.97	0.7448
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	20.85	0.7554
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	24.24	0.7365

Compare expression of checked genes

Potri.002G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.