Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 402 / 2e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 361 / 4e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 144 / 3e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 144 / 5e-40 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 143 / 1e-39 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G80330 141 / 4e-39 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G52820 140 / 5e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 137 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G13610 134 / 3e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 133 / 8e-36 ATGA20OX4 gibberellin 20-oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128100 [exp] 472 / 6e-169 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G106900 [exp] 447 / 4e-159 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G026700 [exp] 142 / 7e-40 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 142 / 1e-39 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.015G134600 [exp] 141 / 6e-39 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 137 / 9e-38 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 137 / 1e-37 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 137 / 2e-37 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G418200 [exp] 136 / 2e-37 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018836 [exp] 395 / 3e-138 AT5G51310 348 / 7e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10009663 [exp] 383 / 8e-134 AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015016 [exp] 158 / 2e-45 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 157 / 2e-44 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10027399 [exp] 152 / 7e-43 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006759 [exp] 147 / 3e-41 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006350 [exp] 144 / 5e-40 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017799 [exp] 134 / 3e-39 AT5G51310 108 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 140 / 1e-38 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10009025 [exp] 135 / 4e-38 AT5G51310 131 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G159500.1 pacid=42779964 polypeptide=Potri.002G159500.1.p locus=Potri.002G159500 ID=Potri.002G159500.1.v4.1 annot-version=v4.1 ATGCCTGAGTGCCATTCTGCAGAACTTCCTATTCTAGATATCTCTCAGCCACTACAGCCGTCTGCTCTGGCTTCACTGGCTGAAGCTTGCCAAGAATGGG GATTTTTTCGTATTAGCAACCATGGAATCTCCAAAGAGCTTTACAACAAACTCTATTCACTTTCACAGCAACTCTTCGGCCTCCCTGCTGAGACAAAACT CGAACTTGGTCCCTCTTCTTCCATAAACACTTACACTCCTCATTTCATTGCTTCTCCTTTCTTTGAGTGCCTCCGAGTTTTTGGACCAAACTTCTTTGCA TCTGCCCAGAGTTCCGCAGATACCCTTTTTGGCCAACAGAGTTTTGAATTCAGAGCGGCACTACAAGAATATGGGACCAAGATGACAGAATTATCGAAGA GAATCGTGGAGATTTTATCGATGAGTTTGGGGGAGGGTTTTGACAATAAGTATTATGAGTCAGAATTCAAAAATTGCCATGGTTATCTGAGGATTATTAA TTACAATCCTCCGAAAGGTTTGGTAGATGAGGTCGAGGGACTTGGAATGCATACAGACATGAGTTGTGTTACCATCGTATACCAGGATGAAGTCGGTGGC CTGCAGGTGAAATCCAGGGAAGGGAAATGGATGGATATAAGTCCAGGTGAGGAAACCTTGGTGGTAAACATAGGAGATTTGTTGCAAGCTTGGAGCAATG ATAAATTAAGATCATCAGAACACCGAATCGTTTTGAAGAAGCCAGTTAACCGTCTTTCTCTTGCCTTTTTTTGGTGCTTCGAGGATGAGAAGGTCATCAT GGCACCAAATGAAGTAGTAGGAGAAGGAAATGCGAGAATCTATGAGCCCTTTGTTTGTTCAGATTATTTGAAGTTCAGAGAGAGCAGTGAAAGAGGGAAG TTTGAAAAGGTTGGCTTCACTGTTAAGGATTTTGCTGGTATTAGTCTCTGA
AA sequence Show only first row Show all	>Potri.002G159500.1 pacid=42779964 polypeptide=Potri.002G159500.1.p locus=Potri.002G159500 ID=Potri.002G159500.1.v4.1 annot-version=v4.1 MPECHSAELPILDISQPLQPSALASLAEACQEWGFFRISNHGISKELYNKLYSLSQQLFGLPAETKLELGPSSSINTYTPHFIASPFFECLRVFGPNFFA SAQSSADTLFGQQSFEFRAALQEYGTKMTELSKRIVEILSMSLGEGFDNKYYESEFKNCHGYLRIINYNPPKGLVDEVEGLGMHTDMSCVTIVYQDEVGG LQVKSREGKWMDISPGEETLVVNIGDLLQAWSNDKLRSSEHRIVLKKPVNRLSLAFFWCFEDEKVIMAPNEVVGEGNARIYEPFVCSDYLKFRESSERGK FEKVGFTVKDFAGISL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.002G159500 [exp]	0	1
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	1.73	0.8844
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	4.00	0.8904
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	6.00	0.8687
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G391100 [exp]	10.19	0.8397
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	10.58	0.8756
AT4G31980			unknown protein		Potri.001G046000 [exp]	20.14	0.8863
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	22.24	0.8698
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	29.24	0.8577
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.011G087200 [exp]	30.38	0.8684	Pt-VTC2.1
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	33.09	0.8747

Compare expression of checked genes

Potri.002G159500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.