Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00460 662 / 0 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 640 / 0 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 540 / 0 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT5G02010 449 / 7e-154 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 435 / 1e-147 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G38430 422 / 1e-143 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT3G55660 404 / 9e-136 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT1G79860 377 / 3e-126 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 368 / 1e-122 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 365 / 9e-122 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084200 [exp] 850 / 0 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.008G062000 [exp] 457 / 5e-156 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 456 / 8e-156 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 445 / 2e-151 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 441 / 1e-148 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 428 / 2e-145 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 426 / 1e-144 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 388 / 5e-130 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.003G052600 [exp] 385 / 5e-129 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014779 [exp] 609 / 0 AT1G01700 554 / 0.0 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10040248 [exp] 463 / 1e-158 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 454 / 5e-155 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 453 / 5e-155 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10036352 [exp] 433 / 2e-150 AT1G01700 387 / 2e-132 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10000399 [exp] 437 / 4e-149 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 436 / 8e-147 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 435 / 3e-146 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10036351 [exp] 391 / 3e-134 AT4G00460 360 / 3e-124 RHO guanyl-nucleotide exchange factor 3 (.1.2) Lus10023983 [exp] 396 / 1e-132 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.002G159700.1 pacid=42777104 polypeptide=Potri.002G159700.1.p locus=Potri.002G159700 ID=Potri.002G159700.1.v4.1 annot-version=v4.1 ATGGATAATTCATCGAATTTTGACGAAATTTCTGAGCCCAGTTATCAACCCTCACCTTCTTCTTTGGATCAAAATGATCAATCAACCGTGGAAACTCCAG TGTACTCAACAATGAGTGGTGATTCTTTCATGTTCGGTCGGACTTATTCAGAGACCTCAGCCTTTTCTGATCCCATAGATGACAACAGCTATTCAAGTGA ACCTTCTCCTTCTCACTGGCCAGTAACCAAATCTGGAGCACAAAATCAGGCTATGTTTGGAAGACTAGAAATGAAGCAACAGAAGCAAGTTGTGGATGAC AAGTTGGATGATCAAGAATCAGTTGACTTAGAACTTGAGACGATGAAAGAAAGATTCTCAAAGCTCTTGCTTGGCGAAGACATGTCAGGAAGTGGCAAAG GTGTCTGCACAGCTGTTACTATATCAAATGCCATAACCAATCTCTATGCAACTGTGTTTGGGCAAAATTTGAGATTAGAACCACTGAAACCTGAGAAGAA ATCGATGTGGAAGAGAGAGATGGATTGCCTTCTTTCCGTATGTGATTACATAGTAGAATTTATCCCCAAGTCTCAGAATTTACGAGATGGGACAGCTCTT GAGGTGATGGAAAGTAGACCAAGATCAGATATTTACATCAACCTTCCGGCATTAACAAAGCTAGACGCGATGCTCATAGAAGTACTGGATAGTTTCCAAG ATAGAGAATTTTGGTATGCAGAACAAGGAAGCATGTCATCGAATTCAACTCGTTCGGGCTCATTTCGCAGAGTTGTTATTCAGCGCAAAGAGGAGAAGTG GTGGGTGCCAGTCCCATGCGTCCCACATGATGGTCTCTCTGAGAAGTCGAGGAAGCACTTGCGACACAAACGTGACTGTGCATATCAAATTCACAAAGCT GCCATGGCCATTAACAGTAGCATTCTTACTGAGATGGAAATTCCACACTCTTACATGGCATCTCTTCCAAAGAGTGGAAGAGCGAGTCTGGGGGACACGA TTTACCGTTACCTGTGTACAGCAGACGGATTCTCCCCAGACCATCTCCTTGACTGTCTCAACTTAGCATCAGAACATGAAGCACTTGAGCTTGCAGACCG AGTCGAAGCTTCAATGTACACATGGAGACGCAAAGCATGCCTAAGCCACTCAAAATCCTCTTGGGACATGGTAAAAGATCTCATGTCTGACATTGACCGA ACTGATAAAAATCATGTTCTAGCAGAAAGAGCCGAGACCTTGCTATTTTGCTTGAAGCAGAGATACCCTGAACTTTCACAAACATCCTTGGACACTTGCA AAATCCAGTACAATCGGGATGTGGGACAAGCAACACTAGAGAGCTACTCAAGAGTTCTAGAAGGGTTAGCATTCAACATTGTTGCTTGGATCGAAGATGT TCTTTTCGTGGACAACTCAGTGAGAACCCAAGATCAATAG
AA sequence Show only first row Show all	>Potri.002G159700.1 pacid=42777104 polypeptide=Potri.002G159700.1.p locus=Potri.002G159700 ID=Potri.002G159700.1.v4.1 annot-version=v4.1 MDNSSNFDEISEPSYQPSPSSLDQNDQSTVETPVYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQNQAMFGRLEMKQQKQVVDD KLDDQESVDLELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFIPKSQNLRDGTAL EVMESRPRSDIYINLPALTKLDAMLIEVLDSFQDREFWYAEQGSMSSNSTRSGSFRRVVIQRKEEKWWVPVPCVPHDGLSEKSRKHLRHKRDCAYQIHKA AMAINSSILTEMEIPHSYMASLPKSGRASLGDTIYRYLCTADGFSPDHLLDCLNLASEHEALELADRVEASMYTWRRKACLSHSKSSWDMVKDLMSDIDR TDKNHVLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGQATLESYSRVLEGLAFNIVAWIEDVLFVDNSVRTQDQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.002G159700 [exp]	0	1
AT3G07870			F-box and associated interacti...		Potri.013G053301 [exp]	2.44	0.8362
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	17.60	0.8128
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	18.08	0.7888
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	22.97	0.7849
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	26.60	0.7720	Pt-CDPK5.3
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016122 [exp]	27.92	0.7705
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	36.18	0.7802
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	37.88	0.7444
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	39.76	0.7474
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	41.64	0.7841

Compare expression of checked genes

Potri.002G159700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.