Plant FIBer expression Database

Potri.002G159800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G084350
[exp]
83 / 1e-22 ND /
Potri.001G178400
[exp]
43 / 4e-07 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027487
[exp]
35 / 0.0008 ND /
PFAM info
Representative CDS sequence
>Potri.002G159800.1 pacid=42778555 polypeptide=Potri.002G159800.1.p locus=Potri.002G159800 ID=Potri.002G159800.1.v4.1 annot-version=v4.1
ATGGAAGAATCAGATACAATGGATGATGAGAAGGGAGAGAGTGGTGGTGATAGTCCTGGAGCTAATGATGGCACAAAGAAGAAATTGTCTAAAGATGGGG
CTGAAGCACTAAAGAAGTGTTTGGAAGAAAACAAAGGGGACCGTAACAAATGCAAGTCCAAGATTGATGCTCTGCGATCTTCTTCTGCTCCAAGAAAACG
ACCCTTGCTACCTTTAAGACTCAAGAGCGGTTCATTGACTGATGTGTGA
AA sequence
>Potri.002G159800.1 pacid=42778555 polypeptide=Potri.002G159800.1.p locus=Potri.002G159800 ID=Potri.002G159800.1.v4.1 annot-version=v4.1
MEESDTMDDEKGESGGDSPGANDGTKKKLSKDGAEALKKCLEENKGDRNKCKSKIDALRSSSAPRKRPLLPLRLKSGSLTDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G159800
[exp]
0 1
AT3G52430 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICI... Potri.007G100600
[exp]
2.82 0.8893
AT3G22530 unknown protein Potri.008G154100
[exp]
4.00 0.8821
AT5G11970 Protein of unknown function (D... Potri.003G043600
[exp]
4.00 0.8740
AT1G70000 MYB myb-like transcription factor ... Potri.010G039233
[exp]
4.58 0.8820
AT3G07565 Protein of unknown function (D... Potri.007G132700
[exp]
7.74 0.8685
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.010G139300
[exp]
8.12 0.8646
AT1G20696 NFD3, NFD03, HM... high mobility group B3 (.1.2.3... Potri.005G101400
[exp]
12.12 0.8757 HMGB915
AT1G69310 WRKY ATWRKY57, WRKY5... WRKY DNA-binding protein 57 (.... Potri.008G094000
[exp]
13.22 0.8812
AT1G05805 bHLH bHLH128 basic helix-loop-helix (bHLH) ... Potri.002G231700
[exp]
13.41 0.8724
AT5G65550 UDP-Glycosyltransferase superf... Potri.010G182650
[exp]
19.44 0.8166

Potri.002G159800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.