Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00440 350 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 202 / 2e-54 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 154 / 1e-38 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 116 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 72 / 1e-12 ATOBGM GTP-binding protein Obg/CgtA (.1) AT5G02390 71 / 4e-12 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G63670 59 / 2e-08 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT5G51850 52 / 2e-06 unknown protein AT5G43880 50 / 1e-05 Protein of unknown function (DUF3741) (.1) AT2G20240 46 / 0.0001 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 1418 / 0 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 218 / 5e-59 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.016G095500 [exp] 110 / 3e-24 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 87 / 3e-17 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 84 / 4e-16 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G253600 [exp] 54 / 6e-07 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042850 [exp] 683 / 0 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 418 / 3e-136 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 426 / 2e-135 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 425 / 7e-135 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10028148 [exp] 195 / 2e-55 AT4G00440 89 / 3e-19 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 156 / 1e-38 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 147 / 5e-36 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 97 / 3e-20 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10002008 [exp] 93 / 5e-19 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 85 / 2e-16 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.002G160000.1 pacid=42778426 polypeptide=Potri.002G160000.1.p locus=Potri.002G160000 ID=Potri.002G160000.1.v4.1 annot-version=v4.1 ATGGCAAAAAAATCACAGAGGCACCCTGTACGATATGAAAGAGAACAATCAGGCTGCATGTGGGGTTTAATTACTATGTTTGACTTCCGCCATGGTCGTT CAACGCAGAAGCTAATTTCAGATAGGAGGCGGGGGACCAGGCATGCTGTTGGTACTGGAACTCCGAAGAATAAGGTTGACAATCTTAGTGAAAATTGTCA AGGCATGATCGATGGTGAGGAGAGCAGAAAAGTAACAGATGATACCAGTAAGCTGAGTGTGAAAAAGCTCATTGAAGAAGAAATGTTCGGTGAGCAAGAC ATAAAGAAGGAAATAAACAATCCTGGAGTAGAACCAAAACAGTCTAATTCAGAAAATGGAGACCACAGAAGAAGAAAAAGTCGTACAAAAAGTTTTGATA TACACATAGAGGATCATAATGTTTCTGAAAGCTTGGAATCTGAACGGCCTTGCCTTCATAATTTAGAGAAGCAAACTACATGTAGTCTTGACATAGGTGA AATAATGGAAGACTTCTGCCGCCAGATCCATCAGAAAAGCTTTGGTAATGTAGAGCGTGACCAGCTTGATGAAGTTCACCATCAGCTGAACCAGAAGAAT CCTGAATTTGAAGAGAAATTGAGTGAGGCAATAAAACTCATAAATGAGAAACTTATTAACTGGAAACACGTTGCTGAAGATGGGGAATTCCACCCATCCA AAGAACTGAGGGATGCACTTCAGATTCTAGTTTCTGATGAGGAATTGTTTCCAAAACTCTTACAAGGTCCAAAGTCCATAATGGTGAAGCATGTTCAAAG CTTGTGGAATGCTCAGGTAGAGAAAGATGAAGAGTCCAAGTCACTTCCAGGATTGAACTCTTCGGAACAGGGGCTTCATGGCTTCAGACATTCTGATGAG GCTATCCATGGTAAGCAGCACAAATTTTTCAGAAGAAAGACCAAATCTCTGGAAAAGAACCCATCAAAGGAAAACAAGGCATCTCAAGCTTCAAATAGAA TTGTTATATTAAAGCCTGGCCCGACAAGCTTGCTACCACCTAAAAATGAAAGCATCATTGGCTCGTCGCGAAAATCTCAATTCACCATTGGAGATAAGGT TCCGAATGAGAGATTTGGTTCCAACTTTTCTCTGACTGAAATTAGAAGAAAGTTGAAAAATGCAATGGGAAAGGAAAGGCAGGATACCTCTACTGATGGG ACTTCAAAGAAATTTGCTAACAAACAACAGGCTGTGGGAAATAGTGAGAAAGGATCCAAGGAGAACCTTGGAAGGAGTTCTCCAAGTAAAGACCACTTCT TTATTGAAAAAATTGCTAGACCTCCCGTGGTTGGCAAAATGAGAGAGAAGACTGGCAAGTTGAAAGAATATGAAATAAGCATGGAATGTGAGGCCGCTAT TTATCCCAAGCATAGGGCATCTAACATCTACATTGAGGCCAAGAAACATCTTTCTGAGATGCTGAGTACTGGCCAGGGGGATGTGGATTTTTCAAGTGAA CAGGTTCCAAAAACCCTCGGCAGGATTCTCTCCCTTCCTGAGTACAGTTTGTCGCCTACTGGTAGTCCTGGAAAGGATTGGGAGCAAGGCTTTCTGACAG CACAGATGAGATTTTCTGCCAATGACAAATTCCAGAAACACGAAGCCAATGTCAGCCATTTAGGTCGAATAGCATTAAACTCAGAGCCTCAGTCATCTGT TTCCAATGACAGCACCGATTGTATAGAACAAGCTTCTTCAAACCCAAATGCAAGTGCCTCAAATGAACTTCATGATAAGGAAGACAAAACCTTGTGCTCT GTTGGAGATGAGATGCCTTCTGAAGGTGAGGCAGAGGTTGTAAAGGAAACTGAAACTGCAATTGATGAAGAGAGTGATGTCTTAGATACTCTATTTGAAC CAAGTAAATCTCCTCTTGATGGAGATGGCCGAAATGGTGATATGTCTGAAGTTTGTGATAAAAAGGAAAATTCAGAATGCTTGGAACATGACTCTGAAGA ACAACCCCCAACTTCTCCATTAACATCTCCATCCACCTCTTCAAACACCAAAAAACTTGACTGTCTAGAGGGTCCTTCTGAGATACCAGAGCGGCCTAGT CCTATATCTGTTCTTGAGCCTCTTTTCACGGAGGAAGATGTCAGCCCAGCAAGCAGCAGATTTGAACCTGTTGAACTAACAGTGCAACCCTCGAGAATTC AATTTGAAGAACATGAATCTTCAGCTGCAGATCGAATCCCTCTTAAAGCTTCTTTAGATGACAAGGAATCGGTATTTGAGTATGTAAAAGCAGTGGTTCA AGCTTCTGGCATGAAGTGGGATGAATTTTATATGAGGTCACATTCTTCAGAACAGCTTCTTGACCAATCAATATTTTTTGAGGTAGAATTCTTTTCCAAC CAGCTTTGTTGTGACAAGAAGCTTCTCTTTGATTCCATCAACGAAGTTCTCATGGAGGTATATGGGCGGTATTTTGGTTGCTTCTCTGGGTTATCATTTG TACAATCTAACATCCGGCCTGTCCCAGACGTGAAAAATGGCATCTATGAGGTTTGGGAAGGAGTCTCTTGGCATCTCCTCCCATTGCCAATGCCTCATAC TTTGGATCAACTTGTCAAGAAAGATATGGCTAAAACTGGAACGTGGATGAACCTTCAATATGATATTGAAACTATCCTTTTTGAAATTGGTGAGGACATT TTTGAAGATTTGATGGAAGAAATCGTTTTTGGAGATCTAATGGAAGAAAATTTATTCATCCATGCAAACGAAAGTTTAGAGGGTGGAAATCAGTTGATTT CAGCTGAGTTGAAGGAAACTGAGAGCAGCATGAGCTCCTAG
AA sequence Show only first row Show all	>Potri.002G160000.1 pacid=42778426 polypeptide=Potri.002G160000.1.p locus=Potri.002G160000 ID=Potri.002G160000.1.v4.1 annot-version=v4.1 MAKKSQRHPVRYEREQSGCMWGLITMFDFRHGRSTQKLISDRRRGTRHAVGTGTPKNKVDNLSENCQGMIDGEESRKVTDDTSKLSVKKLIEEEMFGEQD IKKEINNPGVEPKQSNSENGDHRRRKSRTKSFDIHIEDHNVSESLESERPCLHNLEKQTTCSLDIGEIMEDFCRQIHQKSFGNVERDQLDEVHHQLNQKN PEFEEKLSEAIKLINEKLINWKHVAEDGEFHPSKELRDALQILVSDEELFPKLLQGPKSIMVKHVQSLWNAQVEKDEESKSLPGLNSSEQGLHGFRHSDE AIHGKQHKFFRRKTKSLEKNPSKENKASQASNRIVILKPGPTSLLPPKNESIIGSSRKSQFTIGDKVPNERFGSNFSLTEIRRKLKNAMGKERQDTSTDG TSKKFANKQQAVGNSEKGSKENLGRSSPSKDHFFIEKIARPPVVGKMREKTGKLKEYEISMECEAAIYPKHRASNIYIEAKKHLSEMLSTGQGDVDFSSE QVPKTLGRILSLPEYSLSPTGSPGKDWEQGFLTAQMRFSANDKFQKHEANVSHLGRIALNSEPQSSVSNDSTDCIEQASSNPNASASNELHDKEDKTLCS VGDEMPSEGEAEVVKETETAIDEESDVLDTLFEPSKSPLDGDGRNGDMSEVCDKKENSECLEHDSEEQPPTSPLTSPSTSSNTKKLDCLEGPSEIPERPS PISVLEPLFTEEDVSPASSRFEPVELTVQPSRIQFEEHESSAADRIPLKASLDDKESVFEYVKAVVQASGMKWDEFYMRSHSSEQLLDQSIFFEVEFFSN QLCCDKKLLFDSINEVLMEVYGRYFGCFSGLSFVQSNIRPVPDVKNGIYEVWEGVSWHLLPLPMPHTLDQLVKKDMAKTGTWMNLQYDIETILFEIGEDI FEDLMEEIVFGDLMEENLFIHANESLEGGNQLISAELKETESSMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	5.83	0.9074
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	6.48	0.8963
AT4G00440			Protein of unknown function (D...		Potri.014G084600 [exp]	6.48	0.8631
AT5G67450	C2H2ZnF	AZF1	zinc-finger protein 1 (.1)		Potri.017G091800 [exp]	11.83	0.8887
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	12.84	0.8732
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	13.41	0.8877
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	14.42	0.9014	Pt-FLA14.7
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	14.69	0.8655
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	17.49	0.8844
AT1G48780			unknown protein		Potri.015G045700 [exp]	23.43	0.8788

Compare expression of checked genes

Potri.002G160000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.