Plant FIBer expression Database

Potri.002G160100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01690 274 / 5e-88 ATPRD3 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G084800
[exp]
622 / 0 AT1G01690 274 / 4e-88 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036358
[exp]
243 / 8e-77 AT1G01690 165 / 1e-46 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Lus10014774
[exp]
206 / 3e-63 AT1G01690 160 / 2e-45 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
PFAM info
Representative CDS sequence
>Potri.002G160100.4 pacid=42777017 polypeptide=Potri.002G160100.4.p locus=Potri.002G160100 ID=Potri.002G160100.4.v4.1 annot-version=v4.1
ATGAAGTTGAAGATCAACAAAGCGTGCGATCTCAGCTCCATTTCGGTCCTTCCTCCTCAATCAAGGAGATCAAGTTCTATACCTGTTGGACCACAACAAG
CATCACAGATTCGATCACAACAATCACAGCAGTCATTTTCACAGGGGTTTTCATCTCAGCATGGCATGTTTTCTCAGATCTCTCAGACTTCTCTTGATGA
AGCTCTGACAAATGGTCAGAGATTCAGTTCACAGGAGCGAGAGAACTCTGTGAAGAAGCCATCTTGCTTACCAGTAGTTAGCTATAGACGTGAAGATAGC
CAATTACCAATATCTAGATCGTCTTCCAATCTAATACGCAATTGGAGTGCTGCTCCTGTTCCAGATCATAAATATCAGATAAATGAAGAACTTCATCACC
GGATTGGAATGATGGAAACCTCCTTAACCAAGTTTGGAATGATCTTGGATTCTGTTCAGAGCGATCTTATGCAAGTAAAGAAGGGAATAAAAGAAGTATC
ACTGGAGACGGAAGGCATGCTACAGAAGTTGATTGTCCTTGACACCTCACTGAAGCTAACGAATACGGGACAAGAAGATGTCAAATTCAGCCTTGAGGGG
AGCCTGAAATCTTTATCAGAACAACTAAGCAAGGATAGATATCAAGATAATTTGCAGCAGATATTCTTGGTGCTTTCTACCTTACCAAAGCAGATGGAAA
TGTTTCTGTACAAACTACAAAATGAGCTATGCACAACCTTCACCAAAGAAATTCAGGCAATGGCTTGCAGCGTGAAGACCCCCCTCGACCAAAAAAGTCA
ATCAATCACTGTAGTTCTGCCAAAGGTTACCGGGAATCATGTCACTCCACCGAGAAGGACAGAGCCAGTAAAGAATCCAGCTTTGCCTCCAAAGGTTTCT
GTGCATGCAAAAATAGTTCCAAAGATGGAAACAGGAGGTTGGAAGTCTGTAAAGGTGGAACAACGCTCATTTACACGAGCGGCATCCCTCAGGGAGCAGA
AACGCAACAAAGTTTCTTCAGATCAACAGGAAAAACAAAGTAGAGTTATCATTGATTCAGATGAGGAGATTGAGGGAGGTTTTTCTTGCTTGATTGATGT
CAAGGAAACAGGCATCAGAAACCCCATATTGGATGTGTCGAAGGAAGAGACTGCAAGAATTTTGAGAAAAGCTAGGAGGCAAAAGAGAAAATACTGTAAT
CCTATCATTATTAATTGA
AA sequence
>Potri.002G160100.4 pacid=42777017 polypeptide=Potri.002G160100.4.p locus=Potri.002G160100 ID=Potri.002G160100.4.v4.1 annot-version=v4.1
MKLKINKACDLSSISVLPPQSRRSSSIPVGPQQASQIRSQQSQQSFSQGFSSQHGMFSQISQTSLDEALTNGQRFSSQERENSVKKPSCLPVVSYRREDS
QLPISRSSSNLIRNWSAAPVPDHKYQINEELHHRIGMMETSLTKFGMILDSVQSDLMQVKKGIKEVSLETEGMLQKLIVLDTSLKLTNTGQEDVKFSLEG
SLKSLSEQLSKDRYQDNLQQIFLVLSTLPKQMEMFLYKLQNELCTTFTKEIQAMACSVKTPLDQKSQSITVVLPKVTGNHVTPPRRTEPVKNPALPPKVS
VHAKIVPKMETGGWKSVKVEQRSFTRAASLREQKRNKVSSDQQEKQSRVIIDSDEEIEGGFSCLIDVKETGIRNPILDVSKEETARILRKARRQKRKYCN
PIIIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01690 ATPRD3 ARABIDOPSIS THALIANA PUTATIVE ... Potri.002G160100
[exp]
0 1
AT5G55180 O-Glycosyl hydrolases family 1... Potri.011G094400
[exp]
3.74 0.9313
AT1G77690 LAX3 like AUX1 3 (.1) Potri.002G087000
[exp]
4.69 0.9263 PtrAUX8
AT5G64570 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XY... Potri.003G022900
[exp]
9.38 0.9113 XYL4.3
AT3G05910 Pectinacetylesterase family pr... Potri.013G000900
[exp]
9.64 0.9186
AT3G52590 HAP4, ERD16, UB... HAPLESS 4, EARLY-RESPONSIVE TO... Potri.016G077000
[exp]
15.09 0.9176 UBQ1.1
AT3G54770 RNA-binding (RRM/RBD/RNP motif... Potri.010G216800
[exp]
18.97 0.9060
AT3G12110 ACT11 actin-11 (.1) Potri.010G204300
[exp]
19.10 0.9175 ACT5,Pt-PEAC14.3
AT1G14390 Leucine-rich repeat protein ki... Potri.001G147700
[exp]
23.68 0.9041
AT1G30630 Coatomer epsilon subunit (.1) Potri.011G155800
[exp]
23.87 0.9168 COPE2.1
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.008G083900
[exp]
26.11 0.9098 GAPDH1.4

Potri.002G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.